sanderslab / magellanmapperLinks
MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
☆22Updated last week
Alternatives and similar repositories for magellanmapper
Users that are interested in magellanmapper are comparing it to the libraries listed below
Sorting:
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Segmentation of anatomical structures in a common coordinate space☆34Updated 2 weeks ago
- GPU-based 3D non-rigid volumetric registration☆41Updated 3 months ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated 2 weeks ago
- Registration to BrainGlobe atlases in napari using Elastix☆24Updated 2 weeks ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- Automated 3D brain registration with support for multiple species and atlases.☆140Updated 2 weeks ago
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- A napari plugin for itk-elastix☆39Updated last week
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Updated 8 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Updated last week
- ☆23Updated 3 months ago
- Visualise brainreg registration output☆10Updated 4 years ago
- Create 3D/4D animations using a natural language-based syntax☆61Updated 6 months ago
- The framework for quantification of neuronal anatomy☆54Updated 2 weeks ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆93Updated last year
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆57Updated 5 months ago
- 3D/4D volumetric rendering of microscopy data☆26Updated last month
- CloudReg☆11Updated last year
- ☆34Updated 7 months ago
- ☆46Updated 5 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 8 months ago
- BIRDS plug-in on Fiji and attached jar package☆21Updated 4 years ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆92Updated 4 years ago
- Tools for distributed alignment of massive images☆89Updated this week
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated 2 weeks ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆131Updated 3 weeks ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year