sanderslab / magellanmapperLinks
MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
☆22Updated last week
Alternatives and similar repositories for magellanmapper
Users that are interested in magellanmapper are comparing it to the libraries listed below
Sorting:
- Segmentation of anatomical structures in a common coordinate space☆35Updated last week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- GPU-based 3D non-rigid volumetric registration☆43Updated 5 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Updated last week
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated last week
- Efficient cell detection in large images using cellfinder in napari☆22Updated 2 years ago
- Live Mouse Tracker analysis☆35Updated last week
- Automated 3D brain registration with support for multiple species and atlases.☆143Updated last week
- Registration to BrainGlobe atlases in napari using Elastix☆29Updated last week
- Visualise brainreg registration output☆10Updated 4 years ago
- CloudReg☆11Updated last year
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated 2 years ago
- ☆34Updated 8 months ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Updated 10 months ago
- Process images using SimpleITK in napari☆23Updated 9 months ago
- Stitching of large tiled datasets☆21Updated 10 months ago
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- 3D/4D volumetric rendering of microscopy data☆26Updated 2 months ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆23Updated last week
- Create 3D/4D animations using a natural language-based syntax☆61Updated 8 months ago
- ☆24Updated this week
- Rendering anatomical heatmaps with brainrender and matplotlib☆47Updated last week
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Updated 2 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated 2 years ago
- ☆46Updated 5 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Updated 6 months ago
- ☆40Updated 5 months ago
- Brainways☆22Updated 5 months ago