sanderslab / magellanmapperLinks
MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
☆22Updated this week
Alternatives and similar repositories for magellanmapper
Users that are interested in magellanmapper are comparing it to the libraries listed below
Sorting:
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated this week
- GPU-based 3D non-rigid volumetric registration☆39Updated 2 months ago
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated this week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆52Updated last week
- Visualise brainreg registration output☆10Updated 3 years ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆22Updated 4 months ago
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated this week
- CloudReg☆11Updated last year
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated this week
- The ImageJ framework for quantification of neuronal anatomy☆50Updated this week
- A visualization app for 3D-registered data processed in ABBA and QuPath☆17Updated 2 years ago
- ☆45Updated 5 years ago
- Brain flatmaps generation☆11Updated 2 years ago
- Create 3D/4D animations using a natural language-based syntax☆60Updated 2 months ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- 3D/4D volumetric rendering of microscopy data☆24Updated 3 months ago
- ☆34Updated 2 months ago
- Live Mouse Tracker analysis☆32Updated 2 months ago
- Process images using SimpleITK in napari☆21Updated 3 months ago
- A napari plugin for itk-elastix☆39Updated last year
- Tools for distributed alignment of massive images☆85Updated 2 weeks ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated this week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 3 months ago
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆55Updated last month
- Brainways☆19Updated 2 months ago