sgoldenlab / simba
SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers
☆309Updated this week
Alternatives and similar repositories for simba:
Users that are interested in simba are comparing it to the libraries listed below
- Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with…☆192Updated last year
- Various scripts to support deeplabcut and what to do afterwards!☆149Updated last year
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆180Updated 4 months ago
- a module for kinematic analysis of deeplabcut outputs☆138Updated last year
- R Scripts to analyze deep lab cut point data and related data☆65Updated 2 years ago
- Workshop material for using DeepLabCut☆142Updated last year
- Free, platform independent, behavior tracking software.☆127Updated 7 months ago
- ☆102Updated last month
- End-user version of the Mouse Action Recognition System (MARS)☆60Updated 10 months ago
- We turn natural language descriptions of behaviors into machine-executable code☆213Updated 6 months ago
- ☆83Updated this week
- Quantify user-defined behaviors.☆74Updated 2 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆164Updated 2 months ago
- cell detection in calcium imaging recordings☆370Updated last month
- DeepLabCut based data analysis package including pose estimation and representation learning mediated behavior recognition☆40Updated last week
- A deep learning framework for multi-animal pose tracking.☆456Updated this week
- SDK for running DeepLabCut on a live video stream☆199Updated last year
- Registration of cells across sessions.☆72Updated 6 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 4 months ago
- PyRat is a user friendly library in python to analyze data from the DeepLabCut. Developed to help researchers unfamiliar with programming…☆47Updated 9 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated last month
- miniscope analysis pipeline with interactive visualizations☆93Updated 7 months ago
- Fiber Photometry Modular Analysis Tool Suite☆35Updated 3 years ago
- AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and…☆69Updated last year
- Feeding Experimentation Device version 3☆25Updated 5 months ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆71Updated 3 weeks ago
- Simple vispy-based frame-by-frame behavior annotation GUI. Also can display DeepLabCut poses within videos during annotation.☆14Updated 2 months ago
- An active learning platform for expert-guided, data efficient discovery of behavior.☆55Updated this week
- A Deeplabcut network trained to label mice in open field arena with topdown view☆11Updated 4 years ago