Alternatives and similar repositories for TRAILMAP

Users that are interested in TRAILMAP are comparing it to the libraries listed below

• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆52Updated last week
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆103Updated last month
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆85Updated 2 weeks ago
• AdaptiveMotorControlLab / CellSeg3D
  A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
  ☆100Updated 3 weeks ago
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆22Updated last year
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 3 years ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆134Updated this week
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆50Updated this week
• DeepLabCut / napari-deeplabcut
  a napari plugin for labeling and refining keypoint data within DeepLabCut projects
  ☆57Updated 6 months ago
• nel-lab / FIOLA
  ☆34Updated 2 months ago
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆22Updated this week
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆14Updated this week
• nickdelgrosso / ABBA-QuPath-RegistrationAnalysis
  A visualization app for 3D-registered data processed in ABBA and QuPath
  ☆17Updated 2 years ago
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆216Updated this week
• bkntr / brainways
  Brainways
  ☆19Updated 2 months ago
• yu-lab-vt / AQuA2
  Activity Quantification and Analysis for molecular spatiotemporal signals
  ☆27Updated last week
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆156Updated last week
• NicoKiaru / ABBA-Python
  How to use Aligning Big Brains and Atlases with Python
  ☆15Updated 2 years ago
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆22Updated 3 years ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆36Updated last year
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆33Updated this week
• adamshch / SEUDO
  ☆8Updated 3 years ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆44Updated this week
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆53Updated last year
• BIOP / abba_python
  ABBA, controlled from python
  ☆15Updated 4 months ago
• easy-electrophysiology / easy-electrophysiology-analysis
  Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)
  ☆17Updated 4 months ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆123Updated 2 weeks ago
• cogilab / AMaSiNe
  Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…
  ☆15Updated 2 years ago