albert597 / TRAILMAPLinks
☆45Updated 5 years ago
Alternatives and similar repositories for TRAILMAP
Users that are interested in TRAILMAP are comparing it to the libraries listed below
Sorting:
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆106Updated 3 months ago
- ☆18Updated 3 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆138Updated 2 weeks ago
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆54Updated last week
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆106Updated last month
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- Segmentation of anatomical structures in a common coordinate space☆34Updated 2 weeks ago
- The ImageJ framework for quantification of neuronal anatomy☆52Updated last week
- ☆34Updated 6 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆24Updated 2 weeks ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated 2 weeks ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated 2 weeks ago
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated last month
- Automated 3D cell detection in very large images☆219Updated 2 weeks ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- Brainways☆21Updated 2 months ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- ABBA, controlled from python☆15Updated 2 weeks ago
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated 2 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆30Updated 2 months ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- A Python interface to access neuroanatomical atlases☆165Updated this week
- ☆18Updated 3 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆53Updated 2 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆130Updated 3 weeks ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago