☆46Jun 18, 2026Updated last month
Alternatives and similar repositories for TRAILMAP
Users that are interested in TRAILMAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆20Nov 18, 2025Updated 8 months ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆143Updated this week
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Jul 14, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- ☆41Mar 4, 2024Updated 2 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆60Jun 29, 2026Updated 3 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 8 months ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆127Jun 8, 2026Updated last month
- ☆20Apr 6, 2022Updated 4 years ago
- COmmon COordinate FRAMEwork in R☆42May 19, 2020Updated 6 years ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Various parts made for fluorescence microscopy + optics work☆18Jul 22, 2019Updated 7 years ago
- ☆13Feb 27, 2024Updated 2 years ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- A Python package to visualise neuroanatomical data in atlas space☆662Jul 17, 2026Updated last week
- ☆22Sep 20, 2019Updated 6 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Feb 26, 2021Updated 5 years ago
- MethodsJ2☆14May 6, 2022Updated 4 years ago
- For laying organizational groundwork☆18Jul 12, 2020Updated 6 years ago
- An alpha playground for a web-based labeling tool for DLC☆16Jun 9, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆93Jul 16, 2021Updated 5 years ago
- python tools for BigDataViewer☆23Jul 2, 2026Updated 3 weeks ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Jun 18, 2020Updated 6 years ago
- Liquid handling robot for in situ serial multiplexing☆18Apr 7, 2017Updated 9 years ago
- Create 3D/4D animations using a natural language-based syntax☆60Jun 6, 2025Updated last year
- The ANTsX Ecosystem for Mapping the Mouse Brain☆24Dec 2, 2025Updated 7 months ago
- ImgLib2-based viewer for registered SPIM stacks and more☆44Updated this week
- Blue Brain multi-modal registration and alignment toolbox☆12Feb 14, 2024Updated 2 years ago
- User-affordable and versatile light-sheet microscopy system for cleared specimens☆29Mar 14, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR☆35Jan 2, 2026Updated 6 months ago
- Adaptive Optics plugin for MicroManager☆13May 23, 2022Updated 4 years ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆54Jun 1, 2025Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Updated this week
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆11Mar 4, 2025Updated last year
- a Python API to record video & system timestamps from Imaging Source USB cameras☆72Feb 21, 2023Updated 3 years ago
- Tools to work with Allen Inst CCF data in matlab☆152Jul 15, 2025Updated last year