☆46May 21, 2020Updated 5 years ago
Alternatives and similar repositories for TRAILMAP
Users that are interested in TRAILMAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆18Nov 18, 2025Updated 4 months ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆140Updated this week
- Read and write files from the BrainGlobe neuroanatomy suite☆15Mar 3, 2026Updated 3 weeks ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- Hardware documentation for the mesoSPIM microscope project☆34Aug 21, 2025Updated 7 months ago
- ☆19Apr 6, 2022Updated 3 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 4 months ago
- ☆41Mar 4, 2024Updated 2 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Updated this week
- The ANTsX Ecosystem for Mapping the Mouse Brain☆19Dec 2, 2025Updated 3 months ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆119Aug 18, 2025Updated 7 months ago
- COmmon COordinate FRAMEwork in R☆41May 19, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆46Mar 18, 2026Updated last week
- Various parts made for fluorescence microscopy + optics work☆16Jul 22, 2019Updated 6 years ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- A Python package to visualise neuroanatomical data in atlas space☆635Mar 13, 2026Updated 2 weeks ago
- ☆21Sep 20, 2019Updated 6 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Feb 26, 2021Updated 5 years ago
- MethodsJ2☆14May 6, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- For laying organizational groundwork☆18Jul 12, 2020Updated 5 years ago
- An alpha playground for a web-based labeling tool for DLC☆16Jun 9, 2020Updated 5 years ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆93Jul 16, 2021Updated 4 years ago
- Liquid handling robot for in situ serial multiplexing☆19Apr 7, 2017Updated 8 years ago
- ☆13Feb 27, 2024Updated 2 years ago
- ImgLib2-based viewer for registered SPIM stacks and more☆42Mar 20, 2026Updated last week
- Blue Brain multi-modal registration and alignment toolbox☆12Feb 14, 2024Updated 2 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Jun 18, 2020Updated 5 years ago
- Create 3D/4D animations using a natural language-based syntax☆61Jun 6, 2025Updated 9 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆16Feb 5, 2026Updated last month
- User-affordable and versatile light-sheet microscopy system for cleared specimens☆27Mar 14, 2025Updated last year
- python tools for BigDataViewer☆22Dec 29, 2024Updated last year
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆27Updated this week
- Adaptive Optics plugin for MicroManager☆12May 23, 2022Updated 3 years ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆53Jun 1, 2025Updated 9 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 3 weeks ago