albert597 / TRAILMAP
☆45Updated 4 years ago
Alternatives and similar repositories for TRAILMAP:
Users that are interested in TRAILMAP are comparing it to the libraries listed below
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆89Updated 2 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆52Updated 4 years ago
- ☆18Updated 2 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated this week
- Tools for distributed alignment of massive images☆79Updated 2 weeks ago
- Efficient cell detection in large images using cellfinder in napari☆23Updated last year
- Rendering anatomical heatmaps with brainrender and matplotlib☆34Updated this week
- ☆18Updated 2 years ago
- ☆32Updated last year
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Segmentation of anatomical structures in a common coordinate space☆30Updated this week
- Brainways☆14Updated 2 weeks ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆75Updated this week
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 8 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆45Updated last year
- Standalone cellfinder cell detection algorithm☆19Updated last year
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago
- How to use Aligning Big Brains and Atlases with Python☆14Updated last year
- The ImageJ framework for quantification of neuronal anatomy☆44Updated last week
- Read and write files from the BrainGlobe neuroanatomy suite☆13Updated this week
- Automated 3D brain registration with support for multiple species and atlases.☆129Updated this week
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆20Updated 2 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated 3 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆119Updated last week
- 3D/4D volumetric rendering of microscopy data☆21Updated last month
- Histology processing☆65Updated 10 months ago
- A Python interface to access neuroanatomical atlases☆128Updated this week
- End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR☆30Updated 5 months ago