itsasimiqbal / SeBRe
Developing a Brain Atlas through Deep Learning
☆52Updated last year
Alternatives and similar repositories for SeBRe:
Users that are interested in SeBRe are comparing it to the libraries listed below
- A system for building mouse brain atlas from histology series☆11Updated 4 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆133Updated 2 weeks ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆120Updated last week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆70Updated 3 years ago
- ☆13Updated 5 years ago
- ☆45Updated 4 years ago
- Harmonizing neuroimaging data across scanners and sites☆34Updated 4 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 6 months ago
- Tools for distributed alignment of massive images☆81Updated last week
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆25Updated 3 years ago
- ☆29Updated last year
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆28Updated 2 years ago
- COmmon COordinate FRAMEwork in R☆36Updated 4 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated 9 months ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr …☆65Updated 5 years ago
- A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!☆92Updated last month
- CloudReg☆11Updated last year
- ☆31Updated 4 years ago
- Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940☆16Updated 7 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆34Updated 2 years ago
- Tools for accessing open data sets published by the Allen Institute for Brain Sciences☆14Updated 3 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated last month
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆91Updated 2 weeks ago
- Tools for MRI mouse brain morphometry☆31Updated 8 years ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆88Updated 3 years ago
- ☆12Updated 2 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 9 years ago