itsasimiqbal / SeBReView external linksLinks
Developing a Brain Atlas through Deep Learning
☆53Aug 9, 2025Updated 6 months ago
Alternatives and similar repositories for SeBRe
Users that are interested in SeBRe are comparing it to the libraries listed below
Sorting:
- High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning☆18Feb 21, 2022Updated 3 years ago
- Generate a package-manager-friendly mouse brain atlases collection.☆22Aug 4, 2023Updated 2 years ago
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆22Updated this week
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆93Jul 16, 2021Updated 4 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Nov 24, 2023Updated 2 years ago
- ☆14Sep 2, 2020Updated 5 years ago
- COmmon COordinate FRAMEwork in R☆39May 19, 2020Updated 5 years ago
- 3-D imaging visualisation through slicing☆31Jan 14, 2025Updated last year
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆32May 28, 2024Updated last year
- Segmentation of anatomical structures in a common coordinate space☆35Feb 3, 2026Updated last week
- simple package for augmentation of n-dimensional arrays☆34Aug 10, 2023Updated 2 years ago
- Process images using SimpleITK in napari☆23May 1, 2025Updated 9 months ago
- A Python package to visualise neuroanatomical data in atlas space☆623Feb 3, 2026Updated last week
- Registration to BrainGlobe atlases in napari using Elastix☆29Updated this week
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆41Nov 28, 2025Updated 2 months ago
- analysis tools for large-scale neural recordings☆16Apr 4, 2025Updated 10 months ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Dimensionality-reduction and classification for morphology and electrophysiology☆13Sep 23, 2024Updated last year
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 4 years ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated 11 months ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- brainglobe.info website☆13Feb 6, 2026Updated last week
- Brain flatmaps generation☆11Oct 5, 2022Updated 3 years ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Oct 26, 2022Updated 3 years ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Oct 21, 2022Updated 3 years ago
- Allen Brain Atlas utilities, parsers and data structures☆11Jun 25, 2017Updated 8 years ago
- ☆13Feb 3, 2020Updated 6 years ago
- Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)☆15Mar 18, 2016Updated 9 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Oct 13, 2023Updated 2 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Feb 2, 2026Updated last week
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆14Apr 10, 2025Updated 10 months ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- Search, download, and prepare brain atlas data.☆17Mar 10, 2023Updated 2 years ago
- Fancier logging with python.☆16Feb 2, 2026Updated last week
- Script that registers Histology slices to volumetric image data☆11Oct 4, 2023Updated 2 years ago
- Histology processing☆72Dec 19, 2025Updated last month
- A Rat fMRI multi-center study☆33Aug 12, 2022Updated 3 years ago