itsasimiqbal / SeBReLinks
Developing a Brain Atlas through Deep Learning
☆53Updated 3 months ago
Alternatives and similar repositories for SeBRe
Users that are interested in SeBRe are comparing it to the libraries listed below
Sorting:
- A system for building mouse brain atlas from histology series☆11Updated 5 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆130Updated 3 weeks ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year
- Automated 3D brain registration with support for multiple species and atlases.☆138Updated 2 weeks ago
- ☆13Updated 6 years ago
- A framework for developing neural network models for 3D image processing.☆167Updated last week
- A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!☆99Updated 8 months ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Subtype and Stage Inference (SuStaIn) algorithm with an example using simulated data.☆187Updated last month
- Harmonizing neuroimaging data across scanners and sites☆35Updated 5 years ago
- ☆45Updated 5 years ago
- Multi-modal Image Registration And Connectivity anaLysis☆46Updated this week
- Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940☆16Updated 7 years ago
- Harmonization of multi-site imaging data with ComBat (Python)☆154Updated 2 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆44Updated 3 months ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆74Updated 4 years ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆34Updated last week
- The ANTsX Ecosystem for Mapping the Mouse Brain☆16Updated last week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆106Updated 3 months ago
- a tool to segment the hypothalamus and associated subunits on T1-weighted MRI scans☆26Updated 2 years ago
- ☆18Updated last year
- www.vaa3d.org☆113Updated last year
- Using ANTs to process multiple MR image types for a single subject☆26Updated 8 years ago
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆50Updated 3 years ago
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- Tools for accessing open data sets published by the Allen Institute for Brain Sciences☆14Updated 4 years ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆105Updated this week
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆73Updated 3 weeks ago