itsasimiqbal / SeBReLinks
Developing a Brain Atlas through Deep Learning
☆53Updated last year
Alternatives and similar repositories for SeBRe
Users that are interested in SeBRe are comparing it to the libraries listed below
Sorting:
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- A system for building mouse brain atlas from histology series☆11Updated 4 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 5 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆135Updated 3 weeks ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆120Updated 2 weeks ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 8 months ago
- The ANTsX Ecosystem for Mapping the Mouse Brain☆13Updated this week
- A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!☆92Updated 3 months ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆72Updated 3 years ago
- Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940☆16Updated 7 years ago
- Tools for distributed alignment of massive images☆82Updated this week
- Harmonizing neuroimaging data across scanners and sites☆34Updated 4 years ago
- A toolbox for working with Allen Human Brain Atlas microarray expression data☆100Updated 9 months ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆28Updated 2 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- ☆29Updated last year
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆28Updated last month
- Tools for MRI mouse brain morphometry☆31Updated 8 years ago
- Using ANTs to process multiple MR image types for a single subject☆25Updated 7 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 3 months ago
- ☆13Updated 5 years ago
- Subtype and Stage Inference (SuStaIn) algorithm with an example using simulated data.☆163Updated 5 months ago
- DeepPrep: An accelerated, scalable, and robust pipeline for neuroimaging preprocessing empowered by deep learning☆87Updated last week
- ☆45Updated 5 years ago
- ☆29Updated last year
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆97Updated last week
- U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu☆16Updated 3 years ago
- ☆23Updated 6 months ago
- Affine and Regularized DEformative Numeric Transform (ardent) is a Python package for performing image registration using LDDMM.☆17Updated 4 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year