Alternatives and similar repositories for MesoNet:

Users that are interested in MesoNet are comparing it to the libraries listed below

• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆30Updated this week
• bkntr / brainways
  Brainways
  ☆14Updated 2 weeks ago
• neurodata / CloudReg
  CloudReg
  ☆11Updated 9 months ago
• fdechaumont / lmt-analysis
  Live Mouse Tracker analysis
  ☆26Updated 2 weeks ago
• brainglobe / cellfinder-core
  Standalone cellfinder cell detection algorithm
  ☆19Updated last year
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated last year
• PrincetonUniversity / BrainPipe
  ☆18Updated 2 years ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆52Updated 4 years ago
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆13Updated this week
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆23Updated last year
• nel-lab / FIOLA
  ☆32Updated last year
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆34Updated this week
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆16Updated this week
• Whitlock-Group / HERBS
  ☆51Updated 5 months ago
• petersaj / AP_histology
  Histology processing
  ☆65Updated 10 months ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated last year
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 2 years ago
• neuroinformatics-unit / course-swc-timeseries-analysis-2023
  ☆10Updated last year
• openlists / SpikeResources
  An open list of tools & resources for 'spikes': recordings of single-unit neural activity (action potentials).
  ☆25Updated 2 years ago
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆89Updated 2 months ago
• cogilab / AMaSiNe
  Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…
  ☆14Updated 2 years ago
• brainglobe / bg-brainrender-gui
  A GUI built on brainrender: visualise brain regions, neurons and labelled cells.
  ☆12Updated 4 years ago
• albert597 / TRAILMAP
  ☆45Updated 4 years ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆61Updated last year
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆25Updated 2 years ago
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆20Updated this week
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆45Updated last year
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆20Updated 2 years ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆129Updated this week
• neuroinformatics-unit / spikewrap
  A tool to streamline extracellular electrophysiology analysis using SpikeInterface
  ☆13Updated this week