Alternatives and similar repositories for MesoNet:

Users that are interested in MesoNet are comparing it to the libraries listed below

• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆31Updated 2 weeks ago
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆22Updated 2 weeks ago
• nel-lab / FIOLA
  ☆34Updated last year
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆23Updated last year
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 4 years ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated last year
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• cogilab / AMaSiNe
  Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…
  ☆14Updated 2 years ago
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆14Updated 2 weeks ago
• bkntr / brainways
  Brainways
  ☆16Updated this week
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆40Updated 2 weeks ago
• calebweinreb / SNUB
  ☆27Updated 9 months ago
• adamshch / SEUDO
  ☆8Updated 3 years ago
• neurodata / CloudReg
  CloudReg
  ☆11Updated last year
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 3 years ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆133Updated 2 weeks ago
• Whitlock-Group / HERBS
  ☆51Updated 7 months ago
• INCF / neuroscience-data-structure
  Space for discussion of a standardized structure (directory layout + metadata) for experimental data in systems neuroscience, similar to …
  ☆21Updated 2 years ago
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆21Updated 2 years ago
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆49Updated last month
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆25Updated 2 years ago
• fdechaumont / lmt-analysis
  Live Mouse Tracker analysis
  ☆28Updated 2 weeks ago
• petersaj / AP_histology
  Histology processing
  ☆65Updated last week
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆53Updated 11 months ago
• AllenInstitute / ipfx
  computes intrinsic cell features from intracellular electrophysiology data
  ☆27Updated 5 months ago
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆21Updated 2 weeks ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated last year
• albert597 / TRAILMAP
  ☆45Updated 4 years ago
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆37Updated last year
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated 3 weeks ago