bf777 / MesoNet
A python toolbox for locating and exporting brain regions from mouse brain images.
☆12Updated 4 months ago
Alternatives and similar repositories for MesoNet:
Users that are interested in MesoNet are comparing it to the libraries listed below
- Segmentation of anatomical structures in a common coordinate space☆30Updated this week
- Registration to BrainGlobe atlases in napari using Elastix☆21Updated this week
- Efficient cell detection in large images using cellfinder in napari☆23Updated last year
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- ☆34Updated last year
- Brainways☆16Updated 2 weeks ago
- ☆18Updated 3 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆52Updated 4 years ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆21Updated 2 years ago
- Standalone cellfinder cell detection algorithm☆19Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆47Updated last year
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- Read and write files from the BrainGlobe neuroanatomy suite☆13Updated this week
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated 4 months ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆20Updated 3 weeks ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆38Updated last week
- CloudReg☆11Updated 10 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- ☆18Updated 2 years ago
- ☆26Updated 7 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated this week
- Browser-based NWB visualization and DANDI exploration☆53Updated this week
- Automated 3D brain registration with support for multiple species and atlases.☆132Updated this week
- ☆52Updated 6 months ago
- Live Mouse Tracker analysis☆26Updated this week
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 4 months ago
- Histology processing☆65Updated 11 months ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago
- Region Of Interest Classification and Tracking☆16Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year