A python toolbox for locating and exporting brain regions from mouse brain images.
☆12Oct 22, 2024Updated last year
Alternatives and similar repositories for MesoNet
Users that are interested in MesoNet are comparing it to the libraries listed below
Sorting:
- Pre-processing pipeline for widefield data☆12Dec 11, 2020Updated 5 years ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Oct 26, 2022Updated 3 years ago
- Brain flatmaps generation☆11Oct 5, 2022Updated 3 years ago
- UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images☆13Mar 13, 2026Updated last week
- Web based Image Viewer developed @ Center for Advanced Imaging [University of Queensland]☆19May 18, 2023Updated 2 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- Image processing tool focusing on biological applications☆14Jul 18, 2025Updated 8 months ago
- The ANTsX Ecosystem for Mapping the Mouse Brain☆19Dec 2, 2025Updated 3 months ago
- ☆14Jan 25, 2024Updated 2 years ago
- Anatomical space conventions made easy.☆12Mar 3, 2026Updated 2 weeks ago
- A flexible Python-based GUI for stereotaxic experiment planning.☆12Feb 4, 2026Updated last month
- BIRDS plug-in on Fiji and attached jar package☆21Oct 7, 2021Updated 4 years ago
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆27Updated this week
- Open Neurophysiology Environment☆22Mar 13, 2026Updated last week
- HiLo microscopy reconstruction with NLM denoising☆10Jan 28, 2025Updated last year
- FreiPose: A Deep Learning Framework for Precise Animal Motion Capture in 3D Spaces☆18Apr 11, 2022Updated 3 years ago
- SPM implementation of https://github.com/JosePMarques/MP2RAGE-related-scripts☆13Feb 18, 2026Updated last month
- Adansons Base is a data programming tool for error-analysis of training results. It organizes metadata of unstructured data and creates a…☆28Aug 10, 2022Updated 3 years ago
- Matlab GUI for single R2*/T2* mapping with multi-echo GRE data☆14Oct 4, 2022Updated 3 years ago
- A voxel engine mockup in python/Panda3D☆17Apr 22, 2019Updated 6 years ago
- A mouse brain histology tool for neuroscientists.☆13Feb 16, 2026Updated last month
- Histology processing☆75Mar 13, 2026Updated last week
- Processing Pipeline for Natural Object Dataset (NOD)☆12Jul 17, 2023Updated 2 years ago
- atlasBREX: Automated averaged template-derived brain extraction in animal MRI☆17Jan 15, 2024Updated 2 years ago
- Pytorch implementation of LocaNMF☆36Feb 17, 2020Updated 6 years ago
- Everything needed to replicate the figures from the paper "Engineering recurrent neural networks from task-relevant manifolds and dynamic…☆12Dec 5, 2019Updated 6 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Feb 26, 2021Updated 5 years ago
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- pyqt5 dependent applications for IBL sessions☆34Jan 27, 2026Updated last month
- ☆14Jan 12, 2022Updated 4 years ago
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆47Sep 27, 2019Updated 6 years ago
- Space for discussion of a standardized structure (directory layout + metadata) for experimental data in systems neuroscience, similar to …☆23Apr 24, 2023Updated 2 years ago
- Jax implementation of normcorre☆14Jan 25, 2025Updated last year
- Tools to process widefield data☆12Jul 20, 2021Updated 4 years ago
- Registration to BrainGlobe atlases in napari using Elastix☆29Mar 12, 2026Updated last week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Nov 21, 2024Updated last year
- Simple AI for python games. In very early stages of development. Uses concepts of Goal Orientated Action Planing (GOAP).☆21Apr 24, 2013Updated 12 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Mar 20, 2025Updated last year
- UCLA Multiphoton Miniature Microscope☆17May 19, 2025Updated 10 months ago