dterstege / FASTMAP
ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
☆21Updated 2 years ago
Alternatives and similar repositories for FASTMAP:
Users that are interested in FASTMAP are comparing it to the libraries listed below
- ☆18Updated 3 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated 3 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 4 months ago
- Brainways☆15Updated this week
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago
- ☆18Updated 2 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆90Updated 3 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated last week
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆20Updated 2 weeks ago
- Histology processing☆64Updated 11 months ago
- ☆11Updated 8 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- COmmon COordinate FRAMEwork in R☆36Updated 4 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆36Updated 2 weeks ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆52Updated 4 years ago
- A package to manage electrophysiology analysis.☆14Updated last week
- Fiber Photometry Modular Analysis Tool Suite☆35Updated 3 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆46Updated last year
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- How to use Aligning Big Brains and Atlases with Python☆14Updated last year
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated 9 months ago
- ☆33Updated last year
- ☆52Updated 5 months ago
- motion correction☆16Updated 2 years ago
- Fiber photometry analysis☆22Updated 2 months ago
- Neuroscience/electrophsyiology data analysis tools (mostly Matlab)☆14Updated 5 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- ☆19Updated last year