dterstege / FASTMAP
ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
☆21Updated 2 years ago
Alternatives and similar repositories for FASTMAP:
Users that are interested in FASTMAP are comparing it to the libraries listed below
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated this week
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 5 months ago
- ☆18Updated 2 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- ☆18Updated 3 years ago
- ☆11Updated 8 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆91Updated last week
- Brainways☆16Updated 2 weeks ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆48Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 3 weeks ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆21Updated 2 weeks ago
- Histology processing☆65Updated 2 weeks ago
- COmmon COordinate FRAMEwork in R☆36Updated 4 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆39Updated this week
- ☆34Updated last year
- How to use Aligning Big Brains and Atlases with Python☆15Updated last year
- ☆19Updated last year
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- Registration to BrainGlobe atlases in napari using Elastix☆21Updated 2 weeks ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- ☆51Updated 6 months ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- Neuroscience/electrophsyiology data analysis tools (mostly Matlab)☆14Updated 5 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 10 months ago
- Fiber Photometry Modular Analysis Tool Suite☆36Updated 3 years ago
- Match suite2p ROIs between imaging sessions☆25Updated 5 years ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago