heimel / InVivoToolsLinks
InVivoTools a set of neurophysiology tools, forked from VanHooserTools, containing tools for visual stimulation and analysis of calcium imaging and extracellular electrophysiology data
☆14Updated 3 months ago
Alternatives and similar repositories for InVivoTools
Users that are interested in InVivoTools are comparing it to the libraries listed below
Sorting:
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated last month
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆18Updated 2 months ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Updated 7 years ago
- Matlab package implementing blind deconvolution method for neural spike recovery☆14Updated 9 years ago
- ☆41Updated 4 years ago
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆33Updated last month
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- Shareable, interactive scientific figures in the cloud☆37Updated 4 months ago
- ☆34Updated 8 months ago
- ☆28Updated 2 months ago
- Napari plugin for working with video files.☆13Updated 5 months ago
- Deconvolution of calcium imaging data☆104Updated 11 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆28Updated last week
- An image processing package for removing streaks from SPIM images☆38Updated last year
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆14Updated 5 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆153Updated 3 years ago
- Live Mouse Tracker analysis☆34Updated last month
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Updated 4 years ago
- 3-D imaging visualisation through slicing☆31Updated last year
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆25Updated 9 months ago
- A Python package for feature extraction of neural morphologies☆46Updated 3 months ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 5 years ago
- Brainways☆22Updated 4 months ago
- motion correction☆17Updated 2 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year