ma2o / VarCapLinks
Variant Calling and Postfiltering
☆11Updated 8 years ago
Alternatives and similar repositories for VarCap
Users that are interested in VarCap are comparing it to the libraries listed below
Sorting:
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Updated 3 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 3 months ago
- 🪡Correct and scaffold assemblies using long reads☆56Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- ☆31Updated last year
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- ⛓ Correct misassemblies using linked AND long reads☆60Updated last year
- Pipeline to generate NGS reads from a phylogeny☆39Updated 2 years ago
- ☆26Updated 5 years ago
- ☆53Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆44Updated 2 weeks ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 7 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated last year
- SNP-Assisted SV Calling and Phasing Using ONT☆25Updated 2 years ago
- Graph-based assembly phasing☆85Updated 3 months ago
- ☆14Updated last year
- ♥ Efficient Estimation of Evolutionary Distances☆47Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆79Updated 3 months ago