Tools for querying and analysis of genomic data
☆27Oct 26, 2025Updated last year
Alternatives and similar repositories for biotoolbox
Users that are interested in biotoolbox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NGS perl modules☆10Updated this week
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Nov 21, 2018Updated 7 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Dec 3, 2013Updated 12 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Oct 31, 2025Updated last year
- RNA-Seq Unified Mapper☆27Sep 9, 2022Updated 4 years ago
- Romulus: Robust multi-state identification of transcription factor binding sites from DNase-seq data☆10Mar 6, 2019Updated 7 years ago
- Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib☆26Jan 7, 2025Updated last year
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 9 years ago
- A Modern Perl Framework for High Throughput Sequencing analysis☆17May 6, 2020Updated 6 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 5 months ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Jul 7, 2017Updated 9 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- An alignment tool for optical mapping data☆10May 29, 2020Updated 6 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆19May 12, 2022Updated 4 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 10 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 9 years ago
- Download binary executables and sample data here:☆18Oct 28, 2016Updated 10 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 10 years ago
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆11Oct 13, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 4 years ago
- ☆12Jan 21, 2016Updated 10 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- example applications built using bíogo☆18Apr 19, 2021Updated 5 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 4 years ago
- structural variant database software☆50Updated this week
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 6 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 7 years ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆20Dec 6, 2017Updated 8 years ago
- A R/shiny web application to browse and compare public RNA-seq / ChIP-seq / CAGE datasets☆18Jul 10, 2020Updated 6 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 11 months ago
- Single-cell Bisulfite Sequencing Data Mapping☆13May 19, 2021Updated 5 years ago
- Implementation of hotspot2 by Eric Rynes☆18May 11, 2023Updated 3 years ago
- Cross-platform GUI desktop application for making biological heatmaps☆19Nov 10, 2022Updated 3 years ago
- DeeNA Zip (SAM/BAM compression tool)☆13May 25, 2019Updated 7 years ago