tjparnell / biotoolbox
Tools for querying and analysis of genomic data
☆27Updated 4 months ago
Alternatives and similar repositories for biotoolbox:
Users that are interested in biotoolbox are comparing it to the libraries listed below
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆49Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Converts bam or cram files to fastq format and does quality control.☆26Updated last month
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆43Updated 2 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 5 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆73Updated 11 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- ☆48Updated 5 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆81Updated last year
- SV caller for nanopore data☆91Updated 4 years ago
- Error correction for Illumina RNA-seq reads☆66Updated last year
- mtDNA Variant Caller☆34Updated 4 months ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated last week
- Tools and software library developed by the ONT Applications group☆62Updated 4 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 9 months ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Data from the Human PanGenomics Project☆60Updated 3 years ago
- ☆51Updated 5 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆82Updated last week