tjparnell / biotoolbox
Tools for querying and analysis of genomic data
☆27Updated 4 months ago
Alternatives and similar repositories for biotoolbox:
Users that are interested in biotoolbox are comparing it to the libraries listed below
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆49Updated 4 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 4 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 9 months ago
- ☆47Updated 4 months ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- parallelized blat with multi-threads support☆53Updated 2 months ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆43Updated 2 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆46Updated 6 years ago
- Toolkit for calling structural variants using short or long reads☆101Updated 2 weeks ago
- Tools for the analysis of structural variation in genomes☆78Updated last year
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Error correction for Illumina RNA-seq reads☆66Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 2 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 6 months ago
- Maximum likelihood demultiplexing☆46Updated last month
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 4 years ago