tjparnell / biotoolboxLinks
Tools for querying and analysis of genomic data
☆27Updated this week
Alternatives and similar repositories for biotoolbox
Users that are interested in biotoolbox are comparing it to the libraries listed below
Sorting:
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆74Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 5 months ago
- parallelized blat with multi-threads support☆53Updated 9 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- ☆51Updated 6 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- A collection of command line tools for working with sequencing data☆52Updated last month
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- My bioinfo toolbox☆50Updated 8 months ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- ☆81Updated 7 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- UCSC Nanopore☆44Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 6 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Scallop is a reference-based transcriptome assembler for RNA-seq☆91Updated 4 years ago