biocoder / Perl-for-BioinformaticsLinks
An attempt to help anyone interested in using Perl for Bioinformatics
☆34Updated 5 years ago
Alternatives and similar repositories for Perl-for-Bioinformatics
Users that are interested in Perl-for-Bioinformatics are comparing it to the libraries listed below
Sorting:
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- small RNA analysis from NGS data☆37Updated 9 months ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- ☆51Updated 5 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆55Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 3 years ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆32Updated 3 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆66Updated 8 months ago
- ☆29Updated 5 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 6 years ago
- ☆8Updated 7 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆69Updated 6 months ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 8 years ago
- Version II of Mandalorion☆32Updated 6 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 11 months ago
- A software for calculating telomere length☆70Updated 6 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Tools for working with WGBS data☆14Updated 7 years ago
- KOBAS: a command line tool for identifying significant pathways from genomic data☆30Updated 15 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last week
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆19Updated 6 years ago
- Adapters for trimming☆30Updated 6 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- See the main fork of this repository here >>>☆38Updated last month
- Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools☆51Updated 5 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- My own tools code for NGS data analysis (Next Generation Sequencing)☆30Updated 5 years ago