Alternatives and similar repositories for Perl-for-Bioinformatics

Users that are interested in Perl-for-Bioinformatics are comparing it to the libraries listed below

• zd1 / telseq
  A software for calculating telomere length
  ☆70Updated 6 years ago
• ISUgenomics / common_analyses
  Repository of common bioinformatics scripts
  ☆39Updated 3 years ago
• stephenturner / adapters
  Adapters for trimming
  ☆30Updated 6 years ago
• 4ureliek / TEanalysis
  Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
  ☆27Updated 6 years ago
• sguizard / DensityMap
  DensityMap is perl tool for the visualization of features density along chromosomes
  ☆19Updated 3 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆40Updated 3 years ago
• stephenfloor / extract-transcript-regions
  For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…
  ☆35Updated 2 years ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆45Updated last week
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆67Updated 2 years ago
• nf-core / lncpipe
  UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
  ☆34Updated 5 months ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• riverlee / MitoSeek
  Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing
  ☆41Updated 6 years ago
• Phillip-a-richmond / GenomeAnalysisModule
  Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees…
  ☆25Updated 2 years ago
• hangelwen / miR-PREFeR
  microRNA PREdiction From small RNA-seq data
  ☆29Updated 7 years ago
• YaoLab-Bioinfo / intansv
  Integrative analysis of structural variations.
  ☆40Updated last year
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 4 months ago
• NBISweden / GUESSmyLT
  An efficient way to guess the library type of your RNA-Seq data.
  ☆32Updated 2 years ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆41Updated this week
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆57Updated 8 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆34Updated 5 years ago
• ENCODE-DCC / wgbs-pipeline
  ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
  ☆32Updated 3 years ago
• tanghaibao / bio-pipeline
  My collection of light bioinformatics analysis pipelines for specific tasks
  ☆75Updated last year
• jts / methylation-analysis
  ☆45Updated 8 years ago
• qiukunlong / seeksv
  A bioinformatics tool for SV detection and virus integration discovery
  ☆20Updated 7 years ago
• BimberLab / DISCVRSeq
  A collection of command line tools for working with sequencing data
  ☆51Updated 2 weeks ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆45Updated last year
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 8 years ago
• PapenfussLab / sv_benchmark
  Comprehensive benchmark of structural variant callers
  ☆46Updated 4 years ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆50Updated 2 years ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago