bioperl / p5-bpwrapperLinks
BioPerl scripts and utilities
☆11Updated 7 months ago
Alternatives and similar repositories for p5-bpwrapper
Users that are interested in p5-bpwrapper are comparing it to the libraries listed below
Sorting:
- The BioPerl Web site: http://bioperl.org☆14Updated 5 years ago
- BioPerl wrappers☆36Updated 4 years ago
- ☆37Updated 2 months ago
- Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines☆18Updated this week
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆75Updated 4 years ago
- parallelized blat with multi-threads support☆53Updated 5 months ago
- De novo clustering of long transcript reads into genes☆66Updated 2 months ago
- SEER, reimplemented in python 🐍🔮☆122Updated last month
- Comparison of multiple long read datasets☆134Updated last month
- Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib☆24Updated 5 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆138Updated 4 months ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆153Updated 2 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated 7 months ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- ☆63Updated 2 years ago
- reference-free transcriptome assembly for short and long reads☆107Updated last year
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆94Updated last month
- Create statistic summary of an Oxford Nanopore read dataset☆115Updated 2 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆106Updated 3 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆120Updated 2 years ago
- Yet another k-mer analyzer☆139Updated last year
- Evaluation and polishing workflows for T2T genome assemblies☆129Updated 8 months ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆65Updated 4 years ago
- Small variant calling for haploid samples☆37Updated 2 months ago
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆119Updated last year
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆191Updated 2 weeks ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆114Updated last week
- ☆31Updated 2 months ago
- software for UCE (and general) phylogenomics☆82Updated 3 months ago