bpucker / MGSELinks
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
☆35Updated 3 months ago
Alternatives and similar repositories for MGSE
Users that are interested in MGSE are comparing it to the libraries listed below
Sorting:
- ☆33Updated 4 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 8 months ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 10 months ago
- Genome-Genome circle synteny☆25Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Multi-genome synteny block visualization tool☆47Updated 8 months ago
- An R package to infer and analyze synteny networks from protein sequences☆33Updated 2 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated last month
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- ☆26Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated 2 months ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 6 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆44Updated this week
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Automatic evaluation of HGTs☆30Updated 8 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆40Updated 4 months ago
- orthology assignment using phylogenetic and network analyses☆48Updated 7 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 11 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- ☆33Updated last year
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- Correcting errors in noisy long reads using variation graphs☆50Updated 2 years ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago