bisulfite sequencing pipeline from fastq to methylation reports
☆13Aug 5, 2026Updated this week
Alternatives and similar repositories for pigx_bsseq
Users that are interested in pigx_bsseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Jul 31, 2022Updated 4 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- ☆16Jul 9, 2026Updated last month
- Here I show how to use Deep Learning for biological and biomedical Data Integration.☆11Sep 17, 2020Updated 5 years ago
- Scripts for analyses in the Griffin manuscript☆12Dec 14, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆27Sep 14, 2020Updated 5 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 6 years ago
- ☆12Jun 19, 2026Updated last month
- Pipeline for Analysis of ChIP-Seq data☆10May 20, 2026Updated 2 months ago
- An et al. Nature Communications 2023☆15Jan 19, 2023Updated 3 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Apr 9, 2020Updated 6 years ago
- RNA-seq data amalgamation for a large-scale evolutionary transcriptomics☆12Updated this week
- Mapping pipeline for data generated using Arima-HiC☆85May 22, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Unbiased single-cell transcriptomic data cell type identification☆15May 7, 2024Updated 2 years ago
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated last year
- Identification of differentially methylated regions between multiple epigenomes from BS-treated read mappings via methylated region calli…☆13Sep 1, 2023Updated 2 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- filtering SNPs based on LD and HWE status☆10Jul 3, 2023Updated 3 years ago
- Our laboratory repository☆11Jan 12, 2021Updated 5 years ago
- JBrowse plugin that supports smallRNA alignments☆12Apr 8, 2019Updated 7 years ago
- ☆16Dec 19, 2016Updated 9 years ago
- GOMAP-Singularity is the containerized version of GOMAP☆11Jul 16, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An R package for easy pie charts☆17Aug 25, 2025Updated 11 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆39Updated this week
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- ☆10Jun 9, 2020Updated 6 years ago
- A visualization tool for studying chromosomal rearrangements through interactive synteny block analysis and chromosome breakpoint mapping…☆12Jun 30, 2026Updated last month
- A JBrowse plugin for plotting multiple bigwig subtracks☆12Feb 13, 2022Updated 4 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- Explore and analyze biological sequence data☆18Aug 1, 2024Updated 2 years ago
- A JBrowse plugin for viewing GWAS data☆13Feb 13, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq☆19Dec 6, 2022Updated 3 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆20Feb 4, 2026Updated 6 months ago
- R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions☆13Jun 25, 2024Updated 2 years ago
- home of the bear's lair☆10May 19, 2017Updated 9 years ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 5 months ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago