PacificBiosciences / FALCON-integrate

Related projects ⓘ

Alternatives and complementary repositories for FALCON-integrate

• mroosmalen / nanosv
  SV caller for nanopore data
  ☆90Updated 4 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 6 years ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆76Updated 7 months ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated last week
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆92Updated 8 years ago
• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆45Updated 10 months ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆95Updated 7 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆108Updated last month
• nanoporetech / qcat
  qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
  ☆77Updated 3 years ago
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆69Updated 8 years ago
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆88Updated 10 months ago
• Magdoll / Cogent
  Coding Genome Reconstruction using Iso-Seq data
  ☆60Updated 3 years ago
• CFSAN-Biostatistics / snp-pipeline
  SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…
  ☆57Updated last year
• xiaochuanle / MECAT2
  ☆70Updated 4 years ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆93Updated 9 months ago
• sequencing / NxTrim
  Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
  ☆54Updated 6 years ago
• frankMusacchia / Annocript
  Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …
  ☆54Updated 4 years ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆91Updated 3 years ago
• NCGAS / de-novo-transcriptome-assembly-pipeline
  Combined de novo transcriptome assembly - multiple assemblers - multiple parameters
  ☆18Updated 2 years ago
• glennhickey / progressiveCactus
  Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
  ☆83Updated 6 years ago
• rhysf / Synima
  Synteny Imager
  ☆60Updated 2 months ago
• nanoporetech / wub
  Tools and software library developed by the ONT Applications group
  ☆61Updated 3 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆81Updated 7 months ago
• mapleforest / HaploMerger2
  ☆42Updated 7 years ago
• benedictpaten / marginAlign
  UCSC Nanopore
  ☆43Updated 5 years ago
• tanghaibao / bio-pipeline
  My collection of light bioinformatics analysis pipelines for specific tasks
  ☆71Updated 5 months ago
• hyphaltip / genome-scripts
  Genome Scripts used in fungal comparative genomics
  ☆65Updated 4 years ago