PacificBiosciences / FALCON-integrateLinks
Mostly deprecated. See https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
☆31Updated 7 years ago
Alternatives and similar repositories for FALCON-integrate
Users that are interested in FALCON-integrate are comparing it to the libraries listed below
Sorting:
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- Tools for the analysis of structural variation in genomes☆80Updated last year
- SV caller for nanopore data☆91Updated 5 years ago
- ☆71Updated 5 years ago
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆80Updated 3 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆96Updated 9 months ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Coding Genome Reconstruction using Iso-Seq data☆61Updated 3 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 4 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 4 years ago
- Assembly statistic visualisation☆90Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 3 weeks ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- Structural Variant Index☆75Updated 8 months ago
- ☆49Updated 9 months ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆86Updated 7 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆72Updated 3 years ago
- Python programs for processing GFF3 files☆99Updated last year
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- Find all significant local alignments between reads☆141Updated last year
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆55Updated 9 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆81Updated 4 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆66Updated 5 years ago