Mostly deprecated. See https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
☆31Apr 6, 2018Updated 8 years ago
Alternatives and similar repositories for FALCON-integrate
Users that are interested in FALCON-integrate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Mar 4, 2022Updated 4 years ago
- Making diploid assembly becomes common practice for genomic study☆30Oct 2, 2017Updated 8 years ago
- ☆15Jul 3, 2018Updated 7 years ago
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- Find all significant local alignments between reads☆141Jul 3, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- Evolutionary Bioinformatics Toolkit (EBT)☆12Jul 14, 2020Updated 5 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Jun 27, 2022Updated 3 years ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Feb 15, 2020Updated 6 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆22Nov 14, 2020Updated 5 years ago
- Workflow Description Language - Specification and Implementations☆27Mar 19, 2019Updated 7 years ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Oct 17, 2013Updated 12 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- My blog.☆16Aug 8, 2025Updated 8 months ago
- The DevNet project on github stores the PacBio DevNet website.☆115Jul 9, 2018Updated 7 years ago
- A single molecule sequence assembler for genomes large and small.☆700Feb 24, 2026Updated last month
- variation discovery using long range information in linked-reads☆15Oct 5, 2021Updated 4 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- Source code for running GigaDB☆13Apr 1, 2026Updated 2 weeks ago
- Tool to easily install QIIME's dependencies on Linux systems☆33Oct 14, 2015Updated 10 years ago
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 3 years ago
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆117Sep 11, 2020Updated 5 years ago
- Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data☆14Nov 28, 2019Updated 6 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆354Jul 19, 2025Updated 8 months ago
- ☆18Jan 24, 2018Updated 8 years ago
- Trinity RNA-Seq de novo transcriptome assembly☆888Feb 7, 2025Updated last year
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- File parsing and writing code for Ensembl☆10Apr 9, 2026Updated last week
- a simple lightweight workflow engine for data analysis scripting☆11Sep 5, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Mark duplicate reads from PacBio sequencing of an amplified library☆12Feb 26, 2025Updated last year
- Benchmark on adaptive banded algorithm☆19Feb 26, 2023Updated 3 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 9 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 5 years ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- ☆13Jan 20, 2026Updated 2 months ago