PacificBiosciences / FALCON-integrate
Mostly deprecated. See https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
☆31Updated 6 years ago
Alternatives and similar repositories for FALCON-integrate:
Users that are interested in FALCON-integrate are comparing it to the libraries listed below
- SV caller for nanopore data☆91Updated 4 years ago
- ONT assembly and Illumina polishing pipeline☆91Updated 4 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Tools for the analysis of structural variation in genomes☆78Updated 9 months ago
- De novo transcriptome assembler for short reads☆62Updated 6 years ago
- ☆70Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 2 months ago
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆76Updated 2 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆84Updated 6 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 4 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆66Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 2 weeks ago
- Evaluate variant calls and its combination with k-mer multiplicity☆65Updated 2 years ago
- Python programs for processing GFF3 files☆96Updated 9 months ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆106Updated 2 years ago
- Simple pileup-based variant caller☆85Updated 9 months ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated 10 months ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆47Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆73Updated 3 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆95Updated last year
- Assemblies from HPP Year 1 production☆70Updated last year
- UCSC Nanopore☆43Updated 5 years ago
- Coding Genome Reconstruction using Iso-Seq data☆60Updated 3 years ago