WGLab / NanoMod
NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data
☆37Updated 3 years ago
Alternatives and similar repositories for NanoMod:
Users that are interested in NanoMod are comparing it to the libraries listed below
- Error correction of ONT transcript reads☆58Updated last year
- ☆29Updated 4 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- Structural variant caller☆54Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 5 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last month
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- ☆79Updated 3 weeks ago
- Set of tools to manipulate and visualize modified base bam files☆52Updated 2 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆20Updated 6 years ago
- python plotly Circos from VCF☆34Updated 9 months ago
- UCSC Nanopore☆43Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Long-read Isoform Quantification and Analysis☆39Updated this week
- A pipeline for isoseq☆23Updated 6 years ago
- ☆22Updated 3 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 2 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆30Updated this week
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆36Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago
- Structural Variants Pipeline for Long Reads☆44Updated 6 years ago
- De novo annotation of young retrotransposons☆48Updated 2 years ago