Alternatives and similar repositories for SplitThreader

Users that are interested in SplitThreader are comparing it to the libraries listed below

• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆77Updated 6 months ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• dantaki / SV2
  Support Vector Structural Variation Genotyper
  ☆58Updated 5 years ago
• NCBI-Hackathons / TheHumanPangenome
  A Strategy for Building and Using a Human Reference Pangenome
  ☆71Updated 5 years ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆58Updated 8 years ago
• lh3 / CHM-eval
  ☆54Updated 5 years ago
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆86Updated 2 years ago
• dooguypapua / eKLIPse
  a tool for predicting mitochondrial DNA deletions using soft-clipping
  ☆23Updated 3 years ago
• wdecoster / nano-snakemake
  A snakemake pipeline for SV analysis from nanopore genome sequencing
  ☆51Updated 5 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated 5 months ago
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆72Updated last year
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆55Updated last year
• Illumina / Cyrius
  A tool to genotype CYP2D6 with WGS data
  ☆53Updated 2 years ago
• svviz / svviz
  Read visualizer for structural variants
  ☆84Updated 7 years ago
• deaconjs / ThousandVariantCallersRepo
  Thousand Variant Callers Project Repository
  ☆73Updated 6 years ago
• mcfrith / last-rna
  ☆49Updated 2 years ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆113Updated last year
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• Kingsford-Group / scallop
  Scallop is a reference-based transcriptome assembler for RNA-seq
  ☆90Updated 4 years ago
• Illumina / Polaris
  Data and information about the Polaris study
  ☆53Updated 5 years ago
• schatzlab / appliedgenomics2021
  Materials for Spring 2021 Applied Genomics Course
  ☆53Updated 4 years ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆33Updated 2 years ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆81Updated last year
• holtjma / fmlrc
  a long-read error correction tool using the multi-string Burrows Wheeler Transform
  ☆45Updated 5 years ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆67Updated 2 years ago
• Illumina / akt
  Ancestry and Kinship Tools
  ☆70Updated 2 years ago
• dnanexus-archive / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆103Updated 4 years ago
• oliverSI / GATK4_Best_Practice
  GATK4 Best Practice Nextflow Pipeline
  ☆33Updated 7 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 3 years ago
• bcgsc / RNA-Bloom
  reference-free transcriptome assembly for short and long reads
  ☆109Updated last year