MariaNattestad / SplitThreaderLinks
SplitThreader has moved into Ribbon!
☆67Updated last year
Alternatives and similar repositories for SplitThreader
Users that are interested in SplitThreader are comparing it to the libraries listed below
Sorting:
- GATK4 Best Practice Nextflow Pipeline☆33Updated 7 years ago
- ☆54Updated 5 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- A Strategy for Building and Using a Human Reference Pangenome☆71Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- TIDDIT - structural variant calling☆76Updated 5 months ago
- ☆49Updated 2 years ago
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- Algorithms to compute DNA complexity☆34Updated 3 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- A tool to genotype CYP2D6 with WGS data☆53Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 7 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated 11 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- ☆49Updated 10 months ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- Annotate DNA sequences for Gene Ontology terms☆42Updated 2 weeks ago
- An automated RNA-seq pipeline using Nextflow☆37Updated last year
- A collection of modules and sub-workflows for Nextflow☆28Updated 2 weeks ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 4 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆90Updated 4 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 5 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year