MariaNattestad / SplitThreaderLinks
SplitThreader has moved into Ribbon!
☆67Updated last year
Alternatives and similar repositories for SplitThreader
Users that are interested in SplitThreader are comparing it to the libraries listed below
Sorting:
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- ☆55Updated 5 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- small RNA analysis from NGS data☆37Updated last year
- ☆49Updated 3 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated 2 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- A collection of modules and sub-workflows for Nextflow☆28Updated 2 months ago
- Assembly Based ReAligner☆74Updated 7 years ago
- A Strategy for Building and Using a Human Reference Pangenome☆71Updated 5 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆55Updated 10 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆81Updated 10 months ago
- TIDDIT - structural variant calling☆78Updated 3 weeks ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- GATK4 Best Practice Nextflow Pipeline☆33Updated 7 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 5 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆88Updated 6 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- A simple neural network for calling het-/hom-variants from alignments of single molecule reads to a reference☆60Updated 7 years ago