PacificBiosciences / pbmarkdup
Mark duplicate reads from PacBio sequencing of an amplified library
☆10Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for pbmarkdup
- ☆26Updated 10 months ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- exploratory scripts for clustering ccs amplicon data☆10Updated 3 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated 11 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- Phased structural variant discovery in pangenomes☆30Updated 5 months ago
- Convert HAL to VG☆21Updated 3 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 7 months ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆16Updated last year
- Method to optimally select samples for validation and resequencing☆26Updated 3 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆25Updated 2 months ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 3 years ago
- ☆17Updated last month
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆23Updated 5 months ago
- De novo tandem repeat calling from PacBio HiFi data☆14Updated last month
- Tumor-normal variant calling workflow using HiFi reads☆12Updated 3 weeks ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆22Updated 3 years ago
- Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data☆11Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆46Updated 5 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆27Updated last week
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆29Updated last year
- ☆27Updated 3 months ago
- Detect and phase minor SNVs from long-read sequencing data☆15Updated 2 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆16Updated 4 years ago