Alternatives and similar repositories for pbmarkdup:

Users that are interested in pbmarkdup are comparing it to the libraries listed below

• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• yywan0913 / SVhawkeye
  ☆30Updated last year
• Gaius-Augustus / GUSHR
  Generating UTRs from SHort Reads
  ☆12Updated 4 years ago
• asylvz / SVarp
  Phased structural variant discovery in pangenomes
  ☆32Updated 10 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• PacificBiosciences / trgt-denovo
  De novo tandem repeat calling from PacBio HiFi data
  ☆15Updated last month
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆28Updated 3 months ago
• deepomicslab / SpecHap
  ☆12Updated last year
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 6 months ago
• ndierckx / combiSV
  Combine structural variation outputs from long sequencing reads into a superior call set
  ☆14Updated 9 months ago
• PacificBiosciences / pbampliconclustering
  exploratory scripts for clustering ccs amplicon data
  ☆10Updated 4 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated last year
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆27Updated 3 years ago
• sanger-tol / genomeassembly
  Implementation of ToL genome assembly workflows
  ☆20Updated this week
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated 7 months ago
• PacificBiosciences / kineticsTools
  Tools for detecting DNA modifications from single molecule, real-time sequencing data
  ☆22Updated 3 years ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆37Updated 2 years ago
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆14Updated 3 years ago
• EI-CoreBioinformatics / reat
  Robust Eukaryotic Annotation Toolkit
  ☆18Updated last month
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆37Updated last year
• huangnengCSU / NanoSNP
  A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
  ☆21Updated 2 years ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 9 months ago
• MariaNattestad / dot
  Dot: An interactive dot plot viewer for comparative genomics
  ☆32Updated last year
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆22Updated this week
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆48Updated 3 weeks ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆34Updated 4 months ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 2 weeks ago
• human-pangenomics / hprc-tutorials
  ☆16Updated 11 months ago
• mcfrith / tandem-genotypes
  ☆48Updated 9 months ago