Alternatives and similar repositories for pbmarkdup

Users that are interested in pbmarkdup are comparing it to the libraries listed below

• yywan0913 / SVhawkeye
  ☆33Updated last year
• PacificBiosciences / trgt-denovo
  De novo tandem repeat calling from PacBio HiFi data
  ☆19Updated last month
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆23Updated last year
• genomecuration / JAMg
  Just Annotate My Genome
  ☆19Updated last year
• schatzlab / appliedgenomics2021
  Materials for Spring 2021 Applied Genomics Course
  ☆53Updated 4 years ago
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆21Updated 3 years ago
• kolikem / loma
  ☆14Updated last year
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆33Updated 4 years ago
• farhangus / Sniffles2_plot
  ☆32Updated last year
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆47Updated this week
• PacificBiosciences / FALCON_unzip
  Making diploid assembly becomes common practice for genomic study
  ☆30Updated 8 years ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆25Updated 4 years ago
• hillerlab / CESAR2.0
  ☆29Updated 3 years ago
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆59Updated 4 months ago
• lpryszcz / pyScaf
  Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
  ☆24Updated 7 years ago
• mcfrith / tandem-genotypes
  ☆50Updated last year
• cytham / nanovar
  Structural variant caller for low-depth long-read sequencing data
  ☆45Updated last month
• hitbc / gcSV
  ☆21Updated 10 months ago
• jkimlab / mySyntenyPortal
  A stand-alone application for constructing websites for visualizing and browsing synteny blocks
  ☆18Updated 5 years ago
• kensung-lab / INSurVeyor
  An insertion caller for Illumina paired-end WGS data.
  ☆23Updated 4 months ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆55Updated 4 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆53Updated 10 months ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆47Updated 4 months ago
• nextgenusfs / redmask
  Genome assembly soft-masking using Red (REpeat Detector)
  ☆18Updated 7 years ago
• benoukraflab / NanoVar---archived
  Archived version 1.0.2
  ☆16Updated 6 years ago
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆16Updated 4 years ago
• asylvz / SVarp
  Phased structural variant discovery in pangenomes
  ☆39Updated last month
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆28Updated last year
• sanger-tol / genomeassembly
  Implementation of ToL genome assembly workflows
  ☆24Updated 3 weeks ago