PacificBiosciences / pbmarkdup
Mark duplicate reads from PacBio sequencing of an amplified library
☆11Updated 2 months ago
Alternatives and similar repositories for pbmarkdup
Users that are interested in pbmarkdup are comparing it to the libraries listed below
Sorting:
- ☆31Updated last year
- exploratory scripts for clustering ccs amplicon data☆10Updated 4 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆23Updated 3 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 5 months ago
- ☆30Updated 9 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆48Updated 10 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆28Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆33Updated 2 years ago
- Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data☆11Updated 5 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- SV genotyping with long reads☆40Updated last year
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Updated 2 years ago
- Convert HAL to VG☆22Updated 9 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆32Updated 6 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- A scaffold assembling pipeline for stLFR reads.☆15Updated 4 years ago
- SV calling for diploid assemblies☆27Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆29Updated last year
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago