Simulation toolbox for structural variations.
☆10May 30, 2019Updated 6 years ago
Alternatives and similar repositories for svsim
Users that are interested in svsim are comparing it to the libraries listed below
Sorting:
- Simulator for structural variants in various types of next-generation sequencing data☆11Mar 21, 2017Updated 8 years ago
- ☆51Aug 27, 2019Updated 6 years ago
- PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist of…☆15Apr 13, 2021Updated 4 years ago
- rMETL - realignment-based Mobile Element insertion detection Tool for Long read☆21Aug 13, 2024Updated last year
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- SNP genotyping in polyploids☆17Aug 12, 2020Updated 5 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Dec 4, 2017Updated 8 years ago
- Support Vector Structural Variation Genotyper☆58May 29, 2020Updated 5 years ago
- ☆29Jul 16, 2022Updated 3 years ago
- Genetic maps in autopolyploids☆31Jan 12, 2026Updated last month
- ☆30Sep 21, 2023Updated 2 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Dec 10, 2022Updated 3 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆93Feb 24, 2026Updated last week
- Draw pan- and core-genome curves from proteinortho output☆10Oct 26, 2023Updated 2 years ago
- New version of mpMap☆12Jul 19, 2020Updated 5 years ago
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆10Aug 24, 2025Updated 6 months ago
- A public repo to share methylation risk scores (MRS) derived from UCLA's electronic health records.☆10Aug 25, 2022Updated 3 years ago
- ☆12Feb 16, 2025Updated last year
- HTSlib bindings for Ruby☆11Jan 13, 2026Updated last month
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago
- Ruby UCSC API: An API for the UCSC Genome Database☆19Jul 21, 2022Updated 3 years ago
- ☆10Apr 10, 2021Updated 4 years ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Feb 6, 2018Updated 8 years ago
- GTK 4 front-end to ChatGPT completions written in Rust☆11Nov 2, 2025Updated 4 months ago
- R语言代谢组学数据分析☆12Feb 29, 2016Updated 10 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- satMiner: A Toolkit to NGS satellite DNA mining and analysis☆11Mar 10, 2022Updated 3 years ago
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Nov 18, 2023Updated 2 years ago
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆12May 25, 2023Updated 2 years ago
- ☆11Feb 16, 2021Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆52Jun 5, 2018Updated 7 years ago
- ☆11Aug 20, 2019Updated 6 years ago
- Model and predict short DNA sequence features with neural networks☆80Jun 16, 2019Updated 6 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Jan 16, 2024Updated 2 years ago
- ☆12Aug 2, 2020Updated 5 years ago
- A set of scripts for the assembly of chloroplast genomes out of whole-genome sequencing reads☆12May 2, 2019Updated 6 years ago
- A simulator for horizontal gene transfer (HGT) in microbial communities☆10Oct 5, 2020Updated 5 years ago
- GirFFI-based bindings for Gtk+. Supports both Gtk+ 2 and Gtk+ 3☆19Updated this week
- Simple, safe way to store and distribute tensors☆15Feb 19, 2026Updated last week