WGLab / SVGen
Simulator for structural variants in various types of next-generation sequencing data
☆9Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for SVGen
- ☆14Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆22Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆21Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 10 months ago
- Simplify snpEff annotations for interesting cases☆21Updated 5 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆16Updated 6 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆15Updated last year
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 6 years ago
- Tools to process LIANTI sequence data☆23Updated 5 years ago
- ☆15Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Adapters for trimming☆30Updated 5 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Indel caller for DNA-seq or RNA-seq☆14Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 5 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆20Updated 4 years ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Updated 5 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 5 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆20Updated 6 years ago
- ☆21Updated 3 months ago
- Structural variant pipeline☆17Updated 4 years ago