This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially for NIPT data
☆28May 28, 2026Updated 5 months ago
Alternatives and similar repositories for basevar
Users that are interested in basevar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 8 years ago
- ThermoFisher Ion Torrent plugin to detect fetal trisomies and estimate fetal fraction☆17Mar 23, 2018Updated 8 years ago
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆88Oct 11, 2026Updated 3 weeks ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 4 years ago
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- ☆10Jun 9, 2020Updated 6 years ago
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆46Nov 5, 2019Updated 6 years ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated 2 years ago
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Jun 5, 2019Updated 7 years ago
- NiPTUNE. A Python library for NIPT analyses.☆11Nov 22, 2021Updated 4 years ago
- Notes on SNP-related tools and genome variation analysis☆29Oct 18, 2026Updated 2 weeks ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)☆11Jan 19, 2022Updated 4 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 3 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- ☆16Jul 9, 2026Updated 3 months ago
- ☆12Jun 16, 2023Updated 3 years ago
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆22Aug 10, 2026Updated 2 months ago
- A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysi…☆146Jun 29, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Aug 9, 2019Updated 7 years ago
- ☆15Aug 22, 2023Updated 3 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- 3ASC: variant prioritization tool leveraging multiple instance learning for rare Mendelian disease genomic testing☆11Nov 11, 2024Updated last year
- ☆24Nov 27, 2024Updated last year
- ☆21Jul 28, 2025Updated last year
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆14Apr 14, 2026Updated 6 months ago
- ☆10Updated this week
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆14May 11, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- ☆12Feb 19, 2021Updated 5 years ago
- several scripts for bioinformatics☆25Nov 27, 2025Updated 11 months ago
- Genome-wide association studies (GWAS) for ordered categorical phenotypes☆23Updated this week
- tips and tricks in genome-wide association studies - a tutorial☆14Jul 25, 2023Updated 3 years ago
- ☆32Nov 25, 2019Updated 6 years ago
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago