BIMSBbioinfo / VoltRonLinks
Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration
☆96Updated 2 weeks ago
Alternatives and similar repositories for VoltRon
Users that are interested in VoltRon are comparing it to the libraries listed below
Sorting:
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆54Updated this week
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- ☆38Updated last month
- A docker image for single-cell analysis☆88Updated 3 months ago
- Compgen Course 2025, Module 3 Course Material, Multi-omics integration using deep learning☆58Updated 2 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆111Updated last month
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆86Updated 11 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆68Updated 10 months ago
- Latent Embedding Multivariate Regression☆90Updated 6 months ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 2 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆57Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆114Updated last week
- My youtube programming scripts☆53Updated 4 months ago
- ☆76Updated this week
- R package to access DoRothEA's regulons☆148Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆131Updated 6 months ago
- R package for Pathway RespOnsive GENe activity inference☆105Updated 2 years ago
- A Shiny web app for mapping datasets using Seurat v4☆127Updated 6 months ago
- ☆80Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆93Updated 2 years ago
- A Bayesian model for compositional single-cell data analysis☆163Updated 2 years ago
- Spatial transcriptomics of heart tissue☆85Updated last year
- published papers with a lot of data☆72Updated last month
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆82Updated 2 months ago
- Pan-Cancer Single Cell Classifier☆71Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆204Updated 9 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆160Updated 2 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆129Updated 3 months ago
- Conversion between scRNA-seq objects☆174Updated last month
- ☆90Updated 4 years ago