Alternatives and similar repositories for bilayers

Users that are interested in bilayers are comparing it to the libraries listed below

• ome-zarr-models / ome-zarr-book
  An introduction to OME-Zarr for big bioimaging data
  ☆22Updated last week
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆21Updated 2 years ago
• allen-cell-animated / timelapse-colorizer
  A web-based, time-series visualizer for tracked segmented data.
  ☆12Updated last week
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆27Updated 2 years ago
• wahlby-lab / graph-iss
  Graph-based Decoding for In Situ Sequencing
  ☆10Updated 5 years ago
• schienstockd / cecelia
  Framework for image and flow cytometry analysis
  ☆32Updated 2 months ago
• VeraPancaldiLab / tysserand
  Fast reconstruction of spatial networks from bioimages.
  ☆25Updated 8 months ago
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆60Updated last month
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆20Updated 2 months ago
• PolusAI / bfio
  Interface to the Bioformats Java library
  ☆13Updated last week
• fish-quant / rna2seg
  rna2seg
  ☆17Updated 7 months ago
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆12Updated 2 years ago
• royerlab / inTRACKtive
  Interactive visualization and sharing of cell tracking data in the browser
  ☆44Updated 2 weeks ago
• aeisenbarth / ngff-writer
  A writer and reader for NGFF OME-Zarr datasets
  ☆14Updated 4 years ago
• zjniu / Piscis
  An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
  ☆25Updated 2 months ago
• spatial-image / spatial-image
  A multi-dimensional spatial image data structure for scientific Python.
  ☆43Updated 4 months ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated last year
• haniffalab / webatlas-app
  An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.
  ☆14Updated last month
• HelenaLC / SpatialData
  ☆19Updated 3 weeks ago
• buettnerlab / convexgating
  Optimal gating strategies for flow and mass cytometry.
  ☆16Updated last month
• giovp / spatialdata-sandbox
  ☆14Updated last month
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆47Updated this week
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated last year
• nf-core / mcmicro
  An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
  ☆29Updated 2 weeks ago
• emanuega / MERlin
  MERlin is an extensible analysis pipeline applied to decoding MERFISH data
  ☆35Updated 4 years ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆73Updated last week
• NL-BioImaging / biomero
  BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
  ☆24Updated last week
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆50Updated 10 months ago
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆39Updated last week
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆46Updated 3 weeks ago