Alternatives and similar repositories for CytoPy

Users that are interested in CytoPy are comparing it to the libraries listed below

• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆47Updated 3 weeks ago
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆48Updated last week
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆64Updated last year
• bfurtwa / SCeptre
  SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.
  ☆14Updated last year
• lilab-bcb / harmony-pytorch
  ☆53Updated last month
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆56Updated 11 months ago
• hzc363 / DeepLearningCyTOF
  ☆38Updated 2 years ago
• bedapub / besca
  BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
  ☆50Updated 3 weeks ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated last year
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆48Updated 3 months ago
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆44Updated 2 months ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆44Updated 6 months ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆61Updated 2 months ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆36Updated this week
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆101Updated last year
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆57Updated 2 weeks ago
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆38Updated 4 months ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆81Updated 6 months ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆44Updated this week
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆29Updated 5 months ago
• shuxiaoc / maxfuse
  ☆51Updated 11 months ago
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆61Updated this week
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆74Updated this week
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆52Updated 8 months ago
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆24Updated 5 months ago
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆34Updated this week
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆25Updated last week
• JoachimGoedhart / VolcaNoseR
  Shiny app for making and annotating Volcano plots
  ☆23Updated 8 months ago
• dpeerlab / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆69Updated 4 years ago