burtonrj / CytoPyLinks
A data-centric flow/mass cytometry automated analysis framework
☆42Updated 11 months ago
Alternatives and similar repositories for CytoPy
Users that are interested in CytoPy are comparing it to the libraries listed below
Sorting:
- bioinformatics plotting and tools☆59Updated last year
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆57Updated 7 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆67Updated 3 weeks ago
- Flow & mass cytometry analytics.☆58Updated last week
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆34Updated 9 months ago
- Code and documentation for the curation of cellxgene datasets☆50Updated last week
- BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis☆50Updated 7 months ago
- Multi-omics factor analysis v2☆54Updated 2 months ago
- Multimodal Data (.h5mu) implementation for Python☆105Updated 3 weeks ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆61Updated 2 years ago
- ☆59Updated 7 months ago
- InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.☆115Updated 2 weeks ago
- Multi-modal single cell analysis pipelines☆62Updated 2 weeks ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆109Updated last month
- CZ CELLxGENE Discover Census☆114Updated last week
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Analyzing cellular niches in spatial transcriptomics data☆33Updated last year
- Functional Associations using Variational Autoencoders☆40Updated 3 weeks ago
- Work with trained factor models in Python☆36Updated last year
- data and model repository for single-cell data☆136Updated 2 years ago
- Prize-Collecting Steiner Forests for Interactomes☆62Updated last year
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆94Updated last month
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- Unified knowledge-driven network inference from omics data☆90Updated 2 weeks ago
- software to detect doublets☆95Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆63Updated 2 weeks ago
- One-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART☆24Updated 4 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated 2 weeks ago
- ☆66Updated last year