A data-centric flow/mass cytometry automated analysis framework
☆43Jan 22, 2025Updated last year
Alternatives and similar repositories for CytoPy
Users that are interested in CytoPy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆38Mar 24, 2023Updated 3 years ago
- A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces☆218Mar 30, 2026Updated 3 months ago
- Flow & mass cytometry analytics.☆60Jun 22, 2026Updated last week
- A Python toolbox for quantitative, reproducible flow cytometry analysis☆218Mar 31, 2026Updated 3 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆69Dec 3, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆46Jun 1, 2026Updated last month
- ☆17Apr 17, 2024Updated 2 years ago
- Official implementation of our work: "Automated Identification of Cell Populations in Flow Cytometry Data with Transformers"☆17Jun 30, 2023Updated 3 years ago
- FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data☆34Jun 16, 2022Updated 4 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆20May 14, 2020Updated 6 years ago
- Cytometry dATa anALYsis Tools☆75Apr 28, 2026Updated 2 months ago
- ☆35Jun 11, 2026Updated 2 weeks ago
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆58Nov 5, 2025Updated 7 months ago
- ☆46Aug 13, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 2 years ago
- Python Flow Cytometry Calibration Library☆57Apr 25, 2025Updated last year
- Robust quad-tree based registration on whole slide images☆20Apr 2, 2025Updated last year
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆41Sep 17, 2021Updated 4 years ago
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆48Feb 15, 2017Updated 9 years ago
- Automatically use the latest “vX.X.X” tag as version in your Python package☆13Jun 22, 2026Updated last week
- Optimal gating strategies for flow and mass cytometry.☆16Nov 5, 2025Updated 7 months ago
- UNet script, model, sample data☆14Feb 19, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A package that provides data analysis pipeline for flow cytometry.☆85Mar 12, 2026Updated 3 months ago
- A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data☆29Nov 8, 2020Updated 5 years ago
- collections of tools for cytometry data analysis☆14Jul 9, 2020Updated 5 years ago
- FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation …☆21Nov 4, 2025Updated 7 months ago
- A python package for visualization and analysis of high-throughput flow cytometry data☆128Jul 27, 2023Updated 2 years ago
- ☆17Jul 29, 2021Updated 4 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆55Jun 23, 2026Updated last week
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Jun 15, 2026Updated 2 weeks ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Jul 25, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for differential discovery analyses in high-dimensional cytometry data