Pyranges: a Python framework for ultrafast sequence interval operations
☆56May 30, 2026Updated 3 weeks ago
Alternatives and similar repositories for pyranges1
Users that are interested in pyranges1 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Container class to represent genomic locations and support genomic analysis☆27Updated this week
- Performant Pythonic GenomicRanges☆494Apr 23, 2026Updated 2 months ago
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆33Apr 16, 2026Updated 2 months ago
- ☆15Oct 16, 2025Updated 8 months ago
- Genomic sequence preprocessing toolkit☆14Jun 22, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Python bindings to UCSC BigWig and BigBed library☆36Jun 22, 2026Updated last week
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆13Mar 16, 2026Updated 3 months ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- ☆12Dec 1, 2021Updated 4 years ago
- ☆15May 22, 2026Updated last month
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated 2 years ago
- Analysis tools for SLEAP-based plant root phenotyping.☆13Updated this week
- GWAS and rare variants tests at high speed using regenie☆16Feb 18, 2026Updated 4 months ago
- ☆35Jun 11, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆21Jun 8, 2026Updated 3 weeks ago
- A high-performance BigWig and BigBed library in Rust☆117Jun 7, 2026Updated 3 weeks ago
- Dataloader for applying sequence models to personalized genomics☆30Updated this week
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 5 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆44Jun 20, 2026Updated last week
- ☆13Apr 24, 2023Updated 3 years ago
- This is a prototype version of the Kedro spaceflights tutorial that utilises the modular pipelines pattern.☆11Mar 2, 2022Updated 4 years ago
- Oxbow makes genomic data ready for high-performance analytics.☆153Jun 22, 2026Updated last week
- ☆20Sep 5, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GENE-SWitCH project RNA-Seq analysis pipeline☆30May 6, 2026Updated last month
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- Python package canopy loads the SomaLogic, Inc. proprietary data file called an *.adat. The package provides auxiliary functions for extr…☆23Feb 23, 2026Updated 4 months ago
- Pan-transcriptomic phenotyping☆19May 12, 2026Updated last month
- Fast genomics quality control tools for sequencing data, written in Rust.☆111Updated this week
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆23Jun 27, 2017Updated 9 years ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆33Jun 3, 2026Updated 3 weeks ago
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆195Mar 10, 2025Updated last year
- BigWig and BAM utilities☆103Mar 26, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆17Jun 15, 2026Updated 2 weeks ago
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆170Updated this week
- Genomic interval operations on Pandas DataFrames☆193Updated this week
- ☆18Mar 21, 2023Updated 3 years ago
- Improving gene isoform quantification with miniQuant☆42Jan 13, 2026Updated 5 months ago
- Workflow for preprocessing cfDNA samples.☆12Nov 11, 2024Updated last year
- deploy a snakemake pipeline directly from version control (under development)☆26Jun 18, 2026Updated last week