andrewcharlesjones / cplvmLinks
Contrastive Poisson latent variable models (CPLVMs)
☆11Updated 3 years ago
Alternatives and similar repositories for cplvm
Users that are interested in cplvm are comparing it to the libraries listed below
Sorting:
- Code to reproduce analysis of Milo manuscript☆13Updated 3 years ago
- ☆16Updated 3 years ago
- Nonnegative spatial factorization for multivariate count data☆59Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆16Updated 10 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆34Updated last month
- SpatialCorr: Identify gene sets with spatially varying correlation☆17Updated last year
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Test genes for Spatial Variation☆14Updated 9 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Statistical Inference for Unsupervised Learning☆16Updated 9 months ago
- Alignment of spatial genomics data using deep Gaussian processes☆32Updated 2 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- ☆56Updated last year
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Updated 4 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆49Updated 8 months ago
- Marker Selection by matching manifolds and elastic net☆23Updated 11 months ago
- Quantifying experimental perturbations at single cell resolution☆110Updated last year
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆21Updated 4 months ago
- An interface for Nested Stochastic Block Model for single cell analysis☆37Updated last week
- Multi-omics studies are available here☆52Updated 3 years ago
- Simulating single-cell data using gene regulatory networks 📠☆75Updated last year
- Python code for genetic marker selection using linear programming☆42Updated last year
- ☆21Updated last year
- Analaysis for the batch correction paper☆10Updated 5 months ago
- Robust Integration of Single-Cell Cytometry Datasets☆29Updated last month
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆20Updated 6 months ago
- ☆29Updated 3 years ago