andrewcharlesjones / cplvm
Contrastive Poisson latent variable models (CPLVMs)
☆11Updated 3 years ago
Alternatives and similar repositories for cplvm:
Users that are interested in cplvm are comparing it to the libraries listed below
- Marker Selection by matching manifolds and elastic net☆23Updated 6 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- ☆27Updated last year
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆21Updated last week
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 4 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- ☆16Updated 2 years ago
- ☆21Updated last year
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆28Updated 3 weeks ago
- ☆28Updated 2 years ago
- Python code for genetic marker selection using linear programming☆42Updated last year
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆13Updated 5 years ago
- ☆12Updated last year
- Variant impact phenotyping using Perturb-seq☆9Updated last year
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆22Updated last year
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated last year
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆55Updated 2 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- ☆37Updated last month
- Nonnegative spatial factorization for multivariate count data☆58Updated last year
- ☆15Updated last year
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 5 years ago
- ☆20Updated 3 years ago
- Source code for integrative nonnegative matrix factorization☆18Updated 6 years ago