andrewcharlesjones / cplvmLinks
Contrastive Poisson latent variable models (CPLVMs)
☆11Updated 3 years ago
Alternatives and similar repositories for cplvm
Users that are interested in cplvm are comparing it to the libraries listed below
Sorting:
- ☆16Updated 3 years ago
- Code to reproduce analysis of Milo manuscript☆14Updated 3 years ago
- Nonnegative spatial factorization for multivariate count data☆60Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆34Updated last month
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆16Updated 10 months ago
- Python code for genetic marker selection using linear programming☆42Updated last year
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 4 years ago
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Updated 4 years ago
- Statistical Inference for Unsupervised Learning☆16Updated 10 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- ☆29Updated 2 years ago
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆20Updated 7 months ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆17Updated last year
- post-clustering differential expression test☆36Updated 6 years ago
- Hierarchical classification of cells☆26Updated last year
- Marker Selection by matching manifolds and elastic net☆23Updated last year
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆21Updated 5 months ago
- Test genes for Spatial Variation☆15Updated 10 months ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated last month
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆32Updated 2 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆58Updated 3 years ago
- ☆31Updated 4 years ago
- ☆56Updated last year
- Code for preparing and running the imageCCA method.☆20Updated 8 years ago
- ☆16Updated 6 years ago