jts / bam2fastqLinks
Simple convertor from bam to FASTQ
☆26Updated 10 years ago
Alternatives and similar repositories for bam2fastq
Users that are interested in bam2fastq are comparing it to the libraries listed below
Sorting:
- Structural variant (SV) analysis tools☆40Updated last year
- perSVade: personalized Structural Variation detection☆40Updated last week
- Specifications for PacBio® native file formats☆31Updated last year
- Structural variant merging tool☆57Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- Structural variant caller☆55Updated 4 years ago
- WDL workflows for variant calling and assembly using ONT☆38Updated last week
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Updated 10 months ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated last month
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- ☆84Updated 10 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Code for phasing SVs with SNPs☆53Updated 5 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 10 months ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 4 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- ☆27Updated last month
- A tutorial on structural variant calling for short read sequencing data☆39Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated last year
- for visual evaluation of read support for structural variation☆55Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Genome Annotation Without Nightmares☆46Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Updated 3 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago