Jupyter notebook based multiplex image processing pipeline.
☆10Jun 23, 2026Updated last month
Alternatives and similar repositories for KINTSUGI
Users that are interested in KINTSUGI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A relabeling tool for tiled segmentation with Dask☆18Sep 24, 2024Updated last year
- Accelerated CellStitch for 3D labeling of anisotropic image stacks☆15Mar 1, 2026Updated 5 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- rna2seg☆26May 15, 2025Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 8 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Python package to export tensorflow models as DeepImageJ bundled models☆17Aug 10, 2022Updated 3 years ago
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.☆22Aug 2, 2026Updated last week
- Direct volume rendering with WebGL 2.☆12Jun 8, 2026Updated 2 months ago
- ☆234Jul 30, 2026Updated last week
- ☆29Aug 29, 2024Updated last year
- ☆11May 6, 2024Updated 2 years ago
- Single-cell spatial omics analysis that makes you happy!☆70Updated this week
- A fully scalable robust image feature extraction library.☆29Updated this week
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆68Mar 14, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An ImageJ/FIJI plugin for multi-channel Hyperstack alignment (registration)☆13Dec 7, 2022Updated 3 years ago
- Lab for quantitative bioimage analysis experiments in Python☆20Feb 16, 2026Updated 5 months ago
- Official implementation of the paper "Self-Calibrated Variance-Stabilizing Transformations for Real-World Image Denoising" (ICCV'25)☆15Nov 10, 2025Updated 9 months ago
- ☆10Mar 25, 2024Updated 2 years ago
- ☆37Jul 7, 2024Updated 2 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆46May 1, 2025Updated last year
- marimo + pixi starter template☆19Updated this week
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆17Feb 6, 2026Updated 6 months ago
- ☆22May 12, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14May 13, 2026Updated 2 months ago
- Material to showcase and test several tools and packages releated to ZEN, CZI image files and python packages related to those topics☆20Feb 25, 2026Updated 5 months ago
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel di…☆17Mar 3, 2023Updated 3 years ago
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Mar 13, 2026Updated 4 months ago
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Updated this week
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆17Aug 1, 2025Updated last year
- Multiple trajectory alignment of time-series data☆14Oct 14, 2023Updated 2 years ago
- XMU-Check 自动打卡☆10Jun 10, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆31Jul 30, 2026Updated last week
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆18May 26, 2026Updated 2 months ago
- VISION is a sophisticated software tool specifically designed to analyze and process biological and microscopic images.☆10Jul 25, 2024Updated 2 years ago
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆15Apr 29, 2025Updated last year
- RGB-D Camera Tracking Evaluation☆15Jan 17, 2020Updated 6 years ago
- ☆37Oct 10, 2025Updated 10 months ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago