hyulab / PINTS
☆13Updated last month
Alternatives and similar repositories for PINTS:
Users that are interested in PINTS are comparing it to the libraries listed below
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆30Updated 3 years ago
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆24Updated last month
- ☆18Updated last year
- Single Cell Analysis of Five'Ends☆47Updated 10 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- ☆44Updated 5 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 6 months ago
- Nextflow implementation of SpliZ☆13Updated last year
- RNA editing tests☆16Updated 4 years ago
- ☆31Updated 5 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 7 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 4 years ago
- ☆17Updated 4 years ago
- RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to iden…☆9Updated 6 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆43Updated 5 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆18Updated 6 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 4 months ago
- ☆17Updated 5 months ago
- ☆27Updated 3 years ago
- ☆13Updated 5 years ago
- ☆24Updated 3 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆16Updated last year
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated last year
- Generate the UMI count matrix from CEL-Seq2 sequencing data☆20Updated 6 years ago