nolanlab / TissueSchematicsLinks
Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"
☆11Updated 2 years ago
Alternatives and similar repositories for TissueSchematics
Users that are interested in TissueSchematics are comparing it to the libraries listed below
Sorting:
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆16Updated 4 years ago
- Histology Topography Cytometry Analysis Toolbox☆67Updated last week
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆67Updated 11 months ago
- A pixel classification based multiplexed image segmentation pipeline☆101Updated last year
- ☆27Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- A toolkit for processing multiplexed tissue images☆65Updated last week
- Integrated pipeline for multiplexed image analysis☆97Updated 6 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆41Updated last week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated last year
- comseg☆24Updated 8 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆89Updated last year
- R package for visualization of highly multiplexed imaging data☆33Updated 4 months ago
- Multiple-choice microscopy pipeline☆135Updated 3 weeks ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- ☆73Updated last week
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 4 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 5 months ago
- ☆13Updated last month
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆93Updated last month
- ☆18Updated last year
- A pipeline to transform images into valuable analysis items☆15Updated 4 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- Segmentation error aware clustering for multiplexed imaging☆19Updated 9 months ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated 3 months ago
- ☆15Updated 3 years ago