nolanlab / TissueSchematicsLinks
Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"
☆11Updated 2 years ago
Alternatives and similar repositories for TissueSchematics
Users that are interested in TissueSchematics are comparing it to the libraries listed below
Sorting:
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 4 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Updated 4 years ago
- A toolkit for processing multiplexed tissue images☆67Updated 2 weeks ago
- Histology Topography Cytometry Analysis Toolbox☆69Updated 3 months ago
- ☆27Updated last year
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆39Updated last year
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆71Updated last year
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Updated last year
- R package for visualization of highly multiplexed imaging data☆34Updated 8 months ago
- Spatial Single-Cell Analysis Toolkit☆108Updated 3 weeks ago
- Single-cell spatial proteomics analysis that makes you happy!☆51Updated this week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 months ago
- A pixel classification based multiplexed image segmentation pipeline☆105Updated 2 years ago
- Integrated pipeline for multiplexed image analysis☆102Updated 3 weeks ago
- comseg☆24Updated 11 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆95Updated 2 years ago
- Python package for reading imaging mass cytometry (IMC) files☆18Updated last week
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆23Updated last week
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- ☆88Updated this week
- ☆41Updated last week
- ☆14Updated 3 weeks ago
- Deep learning based spot detection for FISH images.☆30Updated 3 weeks ago
- A pipeline to transform images into valuable analysis items☆18Updated 7 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- Segmentation error aware clustering for multiplexed imaging☆19Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 2 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- ☆30Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated 7 months ago