Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"
☆12Mar 3, 2023Updated 3 years ago
Alternatives and similar repositories for TissueSchematics
Users that are interested in TissueSchematics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆71Nov 4, 2024Updated last year
- ☆18Apr 5, 2024Updated 2 years ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 2 years ago
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data☆12Dec 3, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Sep 23, 2025Updated 7 months ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Aug 8, 2025Updated 8 months ago
- Spatial Single-Cell Analysis Toolkit☆111Mar 11, 2026Updated last month
- ☆12May 21, 2025Updated 11 months ago
- ☆43Apr 13, 2026Updated 2 weeks ago
- ☆34Oct 10, 2025Updated 6 months ago
- Awesome generative spatial omics tools☆24Oct 17, 2025Updated 6 months ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Apr 17, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆24Jun 6, 2023Updated 2 years ago
- ☆71Jan 18, 2023Updated 3 years ago
- Dual-attention Enhanced Spatial Transcriptomics Denoiser☆13May 8, 2025Updated 11 months ago
- 📦 Quickly and easily add a mini map to web page☆21Aug 27, 2021Updated 4 years ago
- R package for visualization of highly multiplexed imaging data☆36May 27, 2025Updated 11 months ago
- Python code that converts JSON data to tree-like output☆18Dec 22, 2022Updated 3 years ago
- ☆50Jun 24, 2022Updated 3 years ago
- Histology Topography Cytometry Analysis Toolbox☆69Mar 23, 2026Updated last month
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Dec 8, 2021Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- public production version of sequin to share with the public☆11Jan 6, 2025Updated last year
- R package for metabolic enzyme enrichment anaylsis☆13Oct 24, 2025Updated 6 months ago
- QTL mapping for Diversity Outbred mice (and other multi-founder advanced intercrosses)☆14Apr 3, 2024Updated 2 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Jan 9, 2026Updated 3 months ago
- Loading and saving of image data.☆10Feb 9, 2024Updated 2 years ago
- A Python package with which to find network motifs in complex networks and to analyze a growing list of network-motif related stuff.☆23Jan 15, 2024Updated 2 years ago
- Interoperability between SpatialData and the Xenium Explorer☆25Jul 31, 2024Updated last year
- ☆28Nov 21, 2019Updated 6 years ago
- ☆32Jun 24, 2025Updated 10 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Course website for Genomic Data Visualization 2022☆16Dec 28, 2022Updated 3 years ago
- Robust quad-tree based registration on whole slide images☆20Apr 2, 2025Updated last year
- ☆12Mar 22, 2023Updated 3 years ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆48Sep 29, 2025Updated 7 months ago
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year
- Predicting the Likelihood to Purchase a Financial Product Following a Direct Marketing Campaign☆27Dec 30, 2022Updated 3 years ago
- An R package for ECM molecule annotation, classification, and analysis☆14Sep 20, 2024Updated last year