findingdan / UPDioLinks
☆14Updated 2 years ago
Alternatives and similar repositories for UPDio
Users that are interested in UPDio are comparing it to the libraries listed below
Sorting:
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- ☆46Updated 6 years ago
- Burden testing against public controls☆50Updated last year
- CN-Learn☆30Updated 6 years ago
- ☆54Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Updated last year
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆21Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- TAPES : a Tool for Assessment and Prioritisation in Exome Studies☆25Updated 4 months ago
- ☆26Updated last year
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- Basic UPD caller☆12Updated 4 years ago
- QDNAseq package for Bioconductor☆54Updated last year
- CNV screening and annotation tool☆25Updated 9 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆70Updated 2 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 6 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Updated 8 years ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆47Updated last year
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated 2 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆36Updated 4 months ago