eyzhao / hrdetect-pipelineLinks
☆36Updated 6 years ago
Alternatives and similar repositories for hrdetect-pipeline
Users that are interested in hrdetect-pipeline are comparing it to the libraries listed below
Sorting:
- An R package for predicting HR deficiency from mutation contexts☆30Updated 10 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆13Updated 8 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- ☆33Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆35Updated 3 months ago
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- An R package to time somatic mutations☆65Updated 5 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆42Updated 3 months ago
- Mutational signature analysis for low statistics SNV data☆64Updated last year
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- ☆21Updated 3 weeks ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 8 months ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 months ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15Updated 7 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Utility functions for FACETS☆39Updated last month
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- DriverPower☆26Updated 11 months ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- ☆72Updated 2 years ago