Probabilistic model for inferring clonal population structure from deep NGS sequencing.
☆121Aug 19, 2020Updated 5 years ago
Alternatives and similar repositories for pyclone
Users that are interested in pyclone are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆149Sep 9, 2020Updated 5 years ago
- Fast method for inferring cancer clonal population structure from SNV data.☆71Jan 20, 2026Updated 3 months ago
- Clonality inference in multiple tumor samples using phylogeny☆13Sep 12, 2017Updated 8 years ago
- ☆13Sep 18, 2017Updated 8 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆233May 15, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Mar 24, 2026Updated last month
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆159Feb 12, 2026Updated 2 months ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆57Mar 10, 2021Updated 5 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 6 years ago
- An R package for inferring the subclonal architecture of tumors☆123Mar 15, 2026Updated last month
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- ☆85Apr 17, 2025Updated last year
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated 2 months ago
- ASCAT R package☆199Feb 12, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Fork of the Polysolver project☆33Nov 21, 2019Updated 6 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆418Mar 13, 2026Updated last month
- ☆123Sep 5, 2023Updated 2 years ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆115Oct 12, 2022Updated 3 years ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15May 8, 2015Updated 10 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 5 years ago
- Visualization tool for temporal clonal evolution.☆18Mar 13, 2020Updated 6 years ago
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated last week
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆116Apr 2, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Framework for Metastatic And Clonal History INtegrative Analysis☆36Mar 5, 2021Updated 5 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆114Apr 23, 2024Updated 2 years ago
- Inferring CNV from Single-Cell RNA-Seq☆663Nov 14, 2025Updated 5 months ago
- ☆120Sep 5, 2023Updated 2 years ago
- The Functional Analysis through Hidden Markov Models Software and Server☆14Nov 6, 2014Updated 11 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆76Sep 12, 2024Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Feb 18, 2026Updated 2 months ago
- Microsatellite Analysis for Normal-Tumor InStability☆78Jul 14, 2022Updated 3 years ago
- STAR-Fusion codebase☆254Apr 18, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆488Feb 25, 2026Updated 2 months ago
- An R package to time somatic mutations☆69Dec 12, 2020Updated 5 years ago
- Precision HLA typing from next-generation sequencing data☆215Mar 3, 2026Updated last month
- VarDict☆203Jan 5, 2024Updated 2 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆172Jan 28, 2026Updated 3 months ago
- Annotates variants in MAF with OncoKB annotation.☆141Feb 19, 2026Updated 2 months ago
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆23May 25, 2020Updated 5 years ago