UMCUGenetics / CHORDLinks
An R package for predicting HR deficiency from mutation contexts
☆30Updated 11 months ago
Alternatives and similar repositories for CHORD
Users that are interested in CHORD are comparing it to the libraries listed below
Sorting:
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆36Updated 6 years ago
- ☆13Updated 8 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- Utility functions for FACETS☆39Updated 2 months ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15Updated 8 months ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆42Updated 4 months ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆35Updated 4 months ago
- ☆39Updated 4 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22Updated last year
- DriverPower☆26Updated last year
- ☆22Updated last month
- ☆33Updated 3 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- DNA copy number detection from off-target sequence data☆33Updated 7 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 6 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- ☆72Updated 2 years ago
- ☆17Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- Single Cell Analysis Automated Workflow☆28Updated 2 years ago