UMCUGenetics / CHORDLinks
An R package for predicting HR deficiency from mutation contexts
☆28Updated 3 months ago
Alternatives and similar repositories for CHORD
Users that are interested in CHORD are comparing it to the libraries listed below
Sorting:
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 2 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- ☆13Updated 7 years ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 10 months ago
- ☆34Updated 5 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated last year
- An R package to time somatic mutations☆61Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- ☆38Updated 5 years ago
- Genomic Association Tester☆31Updated 2 years ago
- Utility functions for FACETS☆35Updated last year
- Rocking R at UMCCR☆9Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- BISulfite-seq CUI Toolkit☆19Updated 3 weeks ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- ☆28Updated last year
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 5 months ago
- DriverPower☆26Updated 4 months ago
- ☆16Updated 6 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- QDNAseq bin annotation for hg38☆15Updated 2 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago