UMCUGenetics / CHORDLinks
An R package for predicting HR deficiency from mutation contexts
☆29Updated 5 months ago
Alternatives and similar repositories for CHORD
Users that are interested in CHORD are comparing it to the libraries listed below
Sorting:
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- ☆13Updated 7 years ago
- ☆36Updated 6 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆21Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- Utility functions for FACETS☆38Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 3 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- ☆21Updated last week
- A comprehensive toolkit for mutational signature analysis☆39Updated last year
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated last year
- Genomic Association Tester☆31Updated 2 years ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15Updated 2 months ago
- ☆38Updated 4 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆40Updated 8 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- DriverPower☆26Updated 6 months ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 8 months ago
- SigProfilerSingleSample allows attributing a known set of mutational signatures to an individual sample. The tool identifies the activity…☆23Updated 6 months ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month