ZhuangLab / SpatialBrainAgingCell22Links
☆14Updated 3 years ago
Alternatives and similar repositories for SpatialBrainAgingCell22
Users that are interested in SpatialBrainAgingCell22 are comparing it to the libraries listed below
Sorting:
- ☆48Updated 3 years ago
- ☆57Updated last year
- Construct Tumor Transition Zone Microenvironment☆53Updated 7 months ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆53Updated 4 years ago
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆13Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 6 months ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆20Updated last year
- ☆33Updated 2 years ago
- ☆17Updated last year
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆88Updated last year
- ☆17Updated 2 years ago
- ☆32Updated 3 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Updated 3 years ago
- Accurate and fast cell marker gene identification with COSG☆54Updated last week
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆81Updated last year
- Analysis for BICCN cross-species primary motor cortex project☆23Updated last year
- ☆129Updated 3 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆80Updated 9 months ago
- scripts associated with NAFLD-NASH project☆25Updated last year
- Codes used in pan-T cell analysis☆65Updated 2 years ago
- Codebase for the paper Zucha et al. titled "Spatiotemporal transcriptomic map of glial cell response in mouse model of acute brain ischem…☆12Updated last year
- R implementation of GeneTrajectory☆69Updated last year
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆47Updated last year
- A tool for semi-automatic cell type harmonization and integration☆117Updated 2 months ago
- Spatial Cellular Estimator for Tumors☆60Updated last month
- These are scripts for pan-cacner B cells analyses.☆58Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆88Updated 3 years ago
- Codes for the scPLC project☆74Updated 3 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆131Updated last year
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆64Updated last year