statgen / libStatGenLinks
Useful set of classes for creating statistical genetic programs.
☆52Updated 2 years ago
Alternatives and similar repositories for libStatGen
Users that are interested in libStatGen are comparing it to the libraries listed below
Sorting:
- 10x Genomics Reads Simulator☆45Updated last year
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated last week
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 5 years ago
- A program to detect denovo-variants using next-generation sequencing data.☆51Updated 5 years ago
- ABRA2☆92Updated 2 years ago
- ☆78Updated 11 years ago
- High-performance error correction for Illumina resequencing data☆71Updated 9 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Updated 6 months ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- ☆94Updated 2 years ago
- Assembly Based ReAligner☆73Updated 7 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Adaptive semi-global banded alignment on string graphs☆66Updated 7 years ago
- This is *NOT* the official repository of samtools.☆47Updated 7 years ago
- Query Mutated Reads from a Bam☆26Updated 6 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- Estimating k-mer coverage histogram of genomics data☆78Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- Read visualizer for structural variants☆84Updated 6 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated 6 months ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 7 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Quality Control of Next Generation Sequencing Data☆20Updated 4 years ago
- Find all significant local alignments between reads☆141Updated 11 months ago