a tool for processing .bed and .vcf files
☆21Apr 25, 2017Updated 8 years ago
Alternatives and similar repositories for joinx
Users that are interested in joinx are comparing it to the libraries listed below
Sorting:
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- SV detection from paired end reads mapping☆38Jul 19, 2010Updated 15 years ago
- ☆14Oct 29, 2021Updated 4 years ago
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 10 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 3 years ago
- ☆14Aug 30, 2025Updated 6 months ago
- Torrent Mapping Alignment Program☆20Mar 2, 2013Updated 13 years ago
- libstrbuf: A powerful string library for C☆17Oct 15, 2016Updated 9 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Apr 1, 2018Updated 7 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Computes various SV statistics☆14Oct 12, 2023Updated 2 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆15Updated this week
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Dec 5, 2025Updated 2 months ago
- mitochondrial variant analysis tools☆15Mar 4, 2021Updated 4 years ago
- SPADEVizR: an R package for Visualization, Analysis and Integration of SPADE results.☆17Dec 5, 2023Updated 2 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Aug 9, 2022Updated 3 years ago
- identifying mutational significance in cancer genomes☆62Nov 16, 2022Updated 3 years ago
- ☆19Updated this week
- detection of mutations causing splicing change☆13Oct 6, 2022Updated 3 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated last month
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 2 months ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆146Oct 4, 2016Updated 9 years ago
- Stupid Simple Elastic Compute Cloud☆16Dec 7, 2023Updated 2 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Nov 4, 2019Updated 6 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 7 years ago
- A collection of scripts used to recreate files and graphs used in the MMRF CoMMpass analysis.☆23Nov 23, 2025Updated 3 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Jan 18, 2017Updated 9 years ago
- v2.x of the microassembly based somatic variant caller☆23Jul 16, 2025Updated 7 months ago
- Structural variant benchmark☆22Mar 4, 2025Updated 11 months ago
- Code for creating cell-type-specific regulatory element annotation files☆19Jun 11, 2024Updated last year
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- A C library for handling bigWig files☆81Jan 17, 2025Updated last year
- reference-guided aligner for next-generation sequencing technologies☆57Sep 20, 2016Updated 9 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Nov 22, 2022Updated 3 years ago