a tool for processing .bed and .vcf files
☆21Apr 25, 2017Updated 9 years ago
Alternatives and similar repositories for joinx
Users that are interested in joinx are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Torrent Mapping Alignment Program☆20Mar 2, 2013Updated 13 years ago
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 11 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 10 years ago
- SV detection from paired end reads mapping☆38Jul 19, 2010Updated 16 years ago
- reference-guided aligner for next-generation sequencing technologies☆57Sep 20, 2016Updated 10 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- A Python interface to the BEDTools API using Cython☆28Mar 16, 2011Updated 15 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Nov 22, 2022Updated 3 years ago
- Genetic changes we can believe in: a web based tool for variant visualization and analysis☆18Apr 17, 2013Updated 13 years ago
- Code from UVA/Cville R Users Group Meetups☆24Nov 26, 2018Updated 7 years ago
- Modified or extracted from other programs☆15Dec 14, 2011Updated 14 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 11 years ago
- ☆21Sep 28, 2026Updated last week
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆46Jun 16, 2026Updated 3 months ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Apr 1, 2018Updated 8 years ago
- Computes various SV statistics☆13Oct 12, 2023Updated 2 years ago
- A simple tool for bulk adding/updating/removing tags from AWS resources.☆13Jan 8, 2016Updated 10 years ago
- identifying mutational significance in cancer genomes☆61Nov 16, 2022Updated 3 years ago
- ☆14Aug 30, 2025Updated last year
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Nov 4, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 11 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆146Oct 4, 2016Updated 10 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆34Aug 9, 2022Updated 4 years ago
- Stupid Simple Elastic Compute Cloud☆15Dec 7, 2023Updated 2 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- libstrbuf: A powerful string library for C☆18Oct 15, 2016Updated 9 years ago
- vcf file manipulation☆22Jul 9, 2015Updated 11 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Sep 27, 2021Updated 5 years ago
- A tool to call somatic single nucleotide variants.☆41Aug 21, 2015Updated 11 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tools for producing pseudo-cgh of next-generation sequencing data☆18Sep 5, 2016Updated 10 years ago
- Introduction to Python 3☆12Dec 4, 2018Updated 7 years ago
- Distributed version restore tool for S3☆12Jan 5, 2015Updated 11 years ago
- ☆14Jul 14, 2026Updated 2 months ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Dec 5, 2025Updated 10 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆36Updated this week
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago