genome / joinxLinks
a tool for processing .bed and .vcf files
☆21Updated 8 years ago
Alternatives and similar repositories for joinx
Users that are interested in joinx are comparing it to the libraries listed below
Sorting:
- ☆78Updated 11 years ago
- An awk-like VCF parser☆56Updated last year
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Tools for bam file processing☆55Updated 10 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- create a gemini-compatible database from a VCF☆55Updated 4 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- ☆36Updated 5 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Analysis Pipeline to analyze Nanopore RNAseq data☆29Updated 3 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 6 months ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- Variant caller GUI + genetic disease analysis☆22Updated 5 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- Adapters for trimming☆30Updated 6 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12Updated 3 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago