genome / joinxLinks
a tool for processing .bed and .vcf files
☆21Updated 8 years ago
Alternatives and similar repositories for joinx
Users that are interested in joinx are comparing it to the libraries listed below
Sorting:
- ☆78Updated 11 years ago
- An awk-like VCF parser☆56Updated last year
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Tools for bam file processing☆55Updated 10 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- ☆37Updated 4 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Q ChIP-seq peak caller☆18Updated last year
- Exon-exon splice junctions across SRA☆42Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Analysis Pipeline to analyze Nanopore RNAseq data☆29Updated 3 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Automated human exome/genome variants detection from FASTQ files☆22Updated 3 years ago
- ☆9Updated 8 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago