genome / joinxLinks
a tool for processing .bed and .vcf files
☆21Updated 8 years ago
Alternatives and similar repositories for joinx
Users that are interested in joinx are comparing it to the libraries listed below
Sorting:
- ☆78Updated 11 years ago
- An awk-like VCF parser☆56Updated last year
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Variant caller GUI + genetic disease analysis☆22Updated 5 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 6 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆67Updated 10 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- ☆95Updated 2 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆31Updated 7 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Maximum likelihood demultiplexing☆47Updated 6 months ago
- ☆37Updated 5 years ago