statgen / fastQValidatorLinks
Validate FastQ Files
☆36Updated 7 years ago
Alternatives and similar repositories for fastQValidator
Users that are interested in fastQValidator are comparing it to the libraries listed below
Sorting:
- Maximum likelihood demultiplexing☆48Updated 8 months ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 14 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- ☆38Updated 8 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ☆95Updated 3 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Genomic data interpretation and visualization Workshop☆21Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 6 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- ☆78Updated 11 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago