Alternatives and similar repositories for BigBWA

Users that are interested in BigBWA are comparing it to the libraries listed below

• citiususc / SparkBWA
  SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…
  ☆69Updated 6 years ago
• DaehwanKimLab / hisat
  Fast spliced aligner with low memory requirements
  ☆41Updated 10 years ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆59Updated 7 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• mourisl / Lighter
  Fast and memory-efficient sequencing error corrector
  ☆94Updated 3 weeks ago
• aquaskyline / SOAP3-dp
  To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…
  ☆31Updated 2 years ago
• sequencing / isaac_variant_caller
  This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka
  ☆37Updated 8 years ago
• broadinstitute / firepony
  Efficient base quality score recalibrator for NGS data
  ☆24Updated 10 years ago
• mozack / abra
  Assembly Based ReAligner
  ☆74Updated 7 years ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆90Updated last year
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• gkno / gkno_launcher
  The gkno launcher for executing tools or pipelines
  ☆31Updated 9 years ago
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆110Updated 5 years ago
• mtw / Bio-ViennaNGS
  A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis
  ☆23Updated 3 months ago
• KHP-Informatics / ngseasy
  Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
  ☆86Updated 8 years ago
• gt1 / biobambam2
  Tools for early stage alignment file processing
  ☆95Updated 6 years ago
• opencb / hpg-aligner
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
  ☆34Updated 8 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 7 years ago
• broadinstitute / wdltool
  ☆18Updated 8 years ago
• sequencing / gvcftools
  Utilities to create and analyze gVCF files
  ☆38Updated 8 years ago
• dcjones / quip
  Compressing next-generation sequencing data with extreme prejudice.
  ☆83Updated 3 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 4 years ago
• StanfordBioinformatics / HugeSeq
  For original Nature Biotechnology Publication (Q1 2012)
  ☆26Updated 8 years ago
• RealTimeGenomics / rtg-core
  RTG Core: Software for alignment and analysis of next-gen sequencing data.
  ☆48Updated 8 months ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆86Updated 7 years ago
• jeremymcrae / clinical-filter
  filtering trio-based genetic variants in VCFs for clinical review
  ☆21Updated 5 years ago
• Oshlack / STRetch
  Method for detecting STR expansions from short-read sequencing data
  ☆63Updated 4 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• ekg / glia
  a string to graph aligner
  ☆41Updated 9 years ago
• ckandoth / variant-filter
  A false-positive filter for variants called from massively parallel sequencing
  ☆29Updated 8 years ago