citiususc / BigBWALinks
BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).
☆31Updated 3 years ago
Alternatives and similar repositories for BigBWA
Users that are interested in BigBWA are comparing it to the libraries listed below
Sorting:
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 6 years ago
- CRAM format specification and java API for read data.☆59Updated 7 years ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- Fast spliced aligner with low memory requirements☆41Updated 10 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 5 years ago
- Efficient base quality score recalibrator for NGS data☆24Updated 10 years ago
- Fast and memory-efficient sequencing error corrector☆94Updated last year
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- BWT-based index for graphs☆73Updated 9 months ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆76Updated last week
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 4 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 7 months ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 3 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- ☆18Updated 7 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆48Updated 6 months ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆55Updated 10 years ago