mahmoudibrahim / JAMM
JAMM Peak Finder for Sequencing Datasets
☆28Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for JAMM
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Chromatin segmentation in R☆19Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆39Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated 10 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- chia pet analysis software☆25Updated 5 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 2 years ago
- Personal diploid genome creation and coordinate conversion☆21Updated last month
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 5 months ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆39Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- How to use CENTIPEDE to determine if a transcription factor is bound.☆25Updated 6 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 5 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆35Updated this week
- An interactive learning resource for next-generation sequencing (NGS) techniques☆27Updated 6 years ago
- IDR☆30Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- gkmSVM R package☆17Updated 6 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 2 months ago