mahmoudibrahim / JAMMLinks
JAMM Peak Finder for Sequencing Datasets
☆29Updated 5 years ago
Alternatives and similar repositories for JAMM
Users that are interested in JAMM are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 5 months ago
- Fast fusion detection using kallisto☆80Updated 2 months ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 3 years ago
- Transcript quantification import with automatic metadata detection☆68Updated this week
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- Differential ATAC-seq toolkit☆27Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week