mahmoudibrahim / JAMM
JAMM Peak Finder for Sequencing Datasets
☆29Updated 5 years ago
Alternatives and similar repositories for JAMM:
Users that are interested in JAMM are comparing it to the libraries listed below
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 weeks ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last month
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Transcript quantification import with automatic metadata detection☆67Updated 2 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 7 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 7 months ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- ☆25Updated 10 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated last month
- a set of NGS pipelines☆24Updated this week
- Chromatin segmentation in R