danielfan / MuSELinks
Somatic point mutation caller
☆17Updated 9 years ago
Alternatives and similar repositories for MuSE
Users that are interested in MuSE are comparing it to the libraries listed below
Sorting:
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- ☆26Updated last year
- DriverPower☆26Updated 11 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- ☆33Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Updated 8 years ago
- Companion repository for the human variant calling pipeline comparison paper☆11Updated 3 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 6 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 7 years ago
- Genomic data interpretation and visualization Workshop☆21Updated last month
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 8 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- ☆15Updated 4 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago