Automatic Assembly For The Fungi
☆29Oct 31, 2026Updated this week
Alternatives and similar repositories for AAFTF
Users that are interested in AAFTF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆40Nov 18, 2023Updated 2 years ago
- Repository for discussion lectures (MCBL121, Winter 2024), up until I decided that google slides was way easier.☆25Dec 17, 2024Updated last year
- FunFlux: A dedicated workflow for fungal genome assembly from short reads, decontamination, completeness validation, and comprehensive ge…☆15Oct 7, 2026Updated 3 weeks ago
- Scripts for antiSMASH/MiBIG data extraction and manipulation☆14May 23, 2024Updated 2 years ago
- Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their ori…☆18Oct 10, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Analyzing plant disease epidemics☆17Jun 18, 2024Updated 2 years ago
- A nextflow pipeline for performing bacterial RNA-Seq data analysis☆14Oct 15, 2026Updated 2 weeks ago
- GeneMark-EP and -EP+: automatic eukaryotic gene prediction supported by spliced aligned proteins☆13Nov 28, 2022Updated 3 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated 6 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆110Jun 25, 2023Updated 3 years ago
- Eukaryotic genome annotation software.☆37Oct 25, 2026Updated last week
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Jun 4, 2026Updated 4 months ago
- Pangenome analysis of eukaryotes.☆21Sep 21, 2020Updated 6 years ago
- This site provides information on conducting reproducible science using the R language.☆13Nov 2, 2016Updated 10 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆15Sep 4, 2023Updated 3 years ago
- GFF toolkit☆17Oct 20, 2026Updated 2 weeks ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Feb 1, 2023Updated 3 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆55May 16, 2026Updated 5 months ago
- Template for building a small workflow in Nextflow☆17May 2, 2022Updated 4 years ago
- Eukaryotic Genome Annotation Pipeline☆402Updated this week
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆13May 28, 2021Updated 5 years ago
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆27Mar 31, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Automated pipeline for analyses of fungal ITS from the Illumina☆34May 1, 2025Updated last year
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆19Aug 16, 2021Updated 5 years ago
- Phyling: phylogenetic inference from annotated genomes☆34Oct 27, 2026Updated last week
- BEAV: Bacterial Element Annotation reVamped☆78Aug 21, 2025Updated last year
- A comprehensive prokaryotic genome annotation pipeline☆92Oct 12, 2026Updated 3 weeks ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Sep 13, 2024Updated 2 years ago
- A Python package for working with Bactopia☆12Aug 5, 2026Updated 2 months ago
- GEne Cluster prediction with COnditional random fields.☆91Jul 29, 2026Updated 3 months ago
- BiG-MEx implementation as Docker images and R packages☆13Feb 9, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generate mutated sequence files from a reference genome.☆11Oct 14, 2026Updated 3 weeks ago
- UFCG: Universal Fungal Core Genes☆37Jul 29, 2025Updated last year
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Apr 23, 2020Updated 6 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Mar 26, 2021Updated 5 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 4 years ago
- Trim lots of metagenomics samples all at once☆10May 2, 2024Updated 2 years ago
- ☆36Dec 24, 2020Updated 5 years ago