stajichlab / AAFTFLinks
Automatic Assembly For The Fungi
☆25Updated this week
Alternatives and similar repositories for AAFTF
Users that are interested in AAFTF are comparing it to the libraries listed below
Sorting:
- BEAV: Bacterial Element Annotation reVamped☆67Updated last week
- Bacterial GWAS analysis☆43Updated last month
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- Discover and annotate the virome☆46Updated last month
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- Gene-flank analysis tool☆29Updated 8 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆43Updated 2 years ago
- IslandPath standalone software☆33Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated 3 weeks ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- whole genome MLST analysis☆46Updated 2 months ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆59Updated 7 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆65Updated 2 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆40Updated 2 years ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆74Updated 3 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 weeks ago
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Calculate assocations between genes and traits☆25Updated 5 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 4 months ago
- ☆75Updated this week
- An R package designed for drawing gene arrow maps☆87Updated last month
- Automatic eukaryotic taxonomic classification☆29Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- ☆52Updated 3 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 3 weeks ago