Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis
☆17Mar 26, 2025Updated last year
Alternatives and similar repositories for itsxpress
Users that are interested in itsxpress are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for discussion lectures (MCBL121, Winter 2024), up until I decided that google slides was way easier.☆25Dec 17, 2024Updated last year
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- ☆11Sep 27, 2024Updated last year
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- large-memory key-value pair store for Python☆50May 26, 2013Updated 12 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tutorial for Metagenome-Atlas☆23Nov 24, 2023Updated 2 years ago
- MUMmer3☆17Jan 12, 2022Updated 4 years ago
- ☆17Mar 24, 2026Updated 3 weeks ago
- Validate and submit reads using Webin-CLI in batch.☆12Aug 3, 2023Updated 2 years ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆49Apr 6, 2026Updated last week
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Dec 14, 2025Updated 4 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆27Updated this week
- Searching large collections of sequencing data with genome-scale queries☆17Feb 5, 2026Updated 2 months ago
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆13Jun 28, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆15Jan 16, 2018Updated 8 years ago
- ☆11Dec 28, 2019Updated 6 years ago
- A command-line tool for profiling CAZyme abundances in metagenomic datasets.☆18Updated this week
- This is a read-only mirror of the CRAN R package repository. GOplot — Visualization of Functional Analysis Data. Homepage: https://gith…☆15Mar 30, 2016Updated 10 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆170Sep 4, 2025Updated 7 months ago
- ☆13Jul 21, 2025Updated 8 months ago
- A repo to reproduce the experiments in the YACHT manuscript☆11Nov 2, 2023Updated 2 years ago
- ☆16Jun 9, 2025Updated 10 months ago
- Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab☆17Apr 9, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 7 years ago
- GitKraken lesson (forked from HBS-RCS)☆10Mar 20, 2026Updated 3 weeks ago
- Code and models for Molecule-Morphology Contrastive Pretraining (MoCoP)☆13Apr 12, 2024Updated 2 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆17Jun 13, 2023Updated 2 years ago
- An R package for estimating library complexity☆13Sep 4, 2022Updated 3 years ago
- ☆15Mar 14, 2023Updated 3 years ago
- This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…☆12Aug 25, 2023Updated 2 years ago
- ☆22Jan 3, 2025Updated last year
- Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn☆12Sep 10, 2021Updated 4 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13May 12, 2022Updated 3 years ago
- ☆18May 30, 2025Updated 10 months ago
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 3 years ago
- Nanopore UMI-linked consensus sequencing☆18Feb 11, 2021Updated 5 years ago
- Workshop materials for SFSU SCIP 2022.☆16Jun 6, 2022Updated 3 years ago
- ☆14Feb 7, 2025Updated last year
- R package providing utilities for INLA☆31Nov 23, 2022Updated 3 years ago