☆13Aug 20, 2025Updated last year
Alternatives and similar repositories for czgenepi
Users that are interested in czgenepi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Static website for the PH4AGE alliance☆14Oct 27, 2023Updated 2 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- Scalable reporting of Cromwell task call resource monitoring data to BigQuery☆10Jul 28, 2021Updated 5 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 5 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆51Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Infectious Disease Sequencing Platform☆91Feb 10, 2026Updated 8 months ago
- Read contamination removal☆24Jan 24, 2024Updated 2 years ago
- Portable WDL workflows for CZ ID production pipelines☆53Apr 23, 2026Updated 6 months ago
- Portable WDL workflows for IDseq production pipelines☆32Jan 19, 2022Updated 4 years ago
- Split Kmer Analysis☆68May 26, 2022Updated 4 years ago
- ☆16Sep 18, 2026Updated last month
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 4 years ago
- Curated datasets on reported cases of the SARS-CoV-2 Omicron (B.1.1.529) Variant of Concern☆10Jan 25, 2022Updated 4 years ago
- PCR primer scheme definitions☆12Sep 8, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bioinformatics Pipeline and Visualization resources☆68Aug 30, 2024Updated 2 years ago
- Consensus assembly and variant calling workflow.☆12May 26, 2015Updated 11 years ago
- ☆28Aug 2, 2023Updated 3 years ago
- POC Nextflow pipeline to run Illumina DRAGEN software☆14Aug 15, 2025Updated last year
- Biological Data Science Workshops☆10Apr 22, 2022Updated 4 years ago
- Nanopore Real-Time Analysis Tool☆17Sep 4, 2024Updated 2 years ago
- MultiQC plugin replicating the most used plots and tables from Illumina's SAV☆11Aug 31, 2026Updated last month
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆18May 19, 2023Updated 3 years ago
- deduplicate FASTA and FASTQ files☆23Feb 16, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆16Jan 25, 2020Updated 6 years ago
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆15Apr 29, 2025Updated last year
- A maintained version of the original ("classic") Pascal codebase for ZZT.☆14Mar 11, 2026Updated 7 months ago
- Coalescent simulation and likelihood for phylodynamic inference☆17May 15, 2025Updated last year
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated 2 years ago
- ☆10May 11, 2016Updated 10 years ago
- viral-ngs: complete pipelines☆75Oct 16, 2026Updated last week
- metag-rev-sup☆23Jun 21, 2017Updated 9 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Mar 26, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Collection template and associated materials for SARS-CoV-2 metadata☆37Oct 27, 2023Updated 2 years ago
- Liftover VCF files☆19Dec 10, 2016Updated 9 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- Faster than s3cp☆37Apr 20, 2022Updated 4 years ago
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆33May 20, 2020Updated 6 years ago
- A unified cross-attention model for predicting antigen binding specificity to both HLA and TCR molecules☆16May 29, 2026Updated 4 months ago
- It's a methods repository!☆10Oct 9, 2026Updated 2 weeks ago