Alternatives and similar repositories for RNAseqTool

Users that are interested in RNAseqTool are comparing it to the libraries listed below

• petitmingchang / TO-GCN
  Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…
  ☆50Updated 2 years ago
• pzweuj / pzweuj.github.io
  Go to
  ☆36Updated 3 weeks ago
• xuzhougeng / org.Osativa.eg.db
  ☆20Updated 5 years ago
• xryanglab / RiboCode
  release version
  ☆54Updated 3 years ago
• ShawnWx2019 / WGCNA-shinyApp
  shiny app for WGCNA...
  ☆29Updated 8 months ago
• xuzhougeng / R-ChIP-data-analysis
  ☆50Updated 6 years ago
• shenmengyuan / RNA_seq_Biotrainee
  DEG analysis and KEGG/GO enrichment analysis
  ☆69Updated 7 years ago
• BSSeeker / BSseeker2
  A versatile aligning pipeline for bisulfite sequencing data
  ☆65Updated 6 years ago
• ShujiaHuang / ilus
  A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysi…
  ☆137Updated 2 months ago
• junjunlab / transPlotR
  An elegant package to visualize gene structures
  ☆79Updated 2 years ago
• xmliu01 / Uncovering-the-TRN-involved-in-boosting-wheat-regeneration-and-transformation
  Code used in article "Uncovering the transcriptional regulatory network involved in boosting wheat regeneration and transformation".
  ☆9Updated 2 years ago
• iMetaScience / iMetaPlot
  iMeta teaches you to plot
  ☆53Updated 2 years ago
• PiaoyangGuohai1 / WES-analysis
  ☆31Updated 2 years ago
• HongboDoll / TomatoSuperPanGenome
  Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…
  ☆56Updated last year
• guoweilong / cgmaptools
  toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
  ☆62Updated last year
• Linhua-Sun / Ath_Heat_Hi-C
  Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis
  ☆9Updated 5 years ago
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆67Updated 6 years ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆64Updated last year
• yuanlizhanshi / NGS_Workflow
  Some NGS workflow created by snakemake
  ☆13Updated 6 months ago
• Tong-Chen / Bioinfo_course_R
  ☆38Updated last year
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆152Updated 11 months ago
• WGLab / dragonstar2019
  ☆135Updated 5 years ago
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆164Updated 2 months ago
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆48Updated 6 years ago
• FelixKrueger / SNPsplit
  Allele-specific alignment sorting
  ☆58Updated 2 years ago
• YuSugihara / MutMap
  MutMap pipeline to identify causative mutations responsible for a phenotype
  ☆54Updated 6 months ago
• Xinglab / rmats2sashimiplot
  ☆148Updated 2 months ago
• dozmorovlab / TADCompare
  Package for analysis and characterization of differential TADs
  ☆25Updated 3 years ago
• ChenFengling / HiCpipe
  an efficient Hi-C data processing pipeline
  ☆17Updated last year
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆45Updated 5 years ago