Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"
☆28Dec 7, 2024Updated last year
Alternatives and similar repositories for MetaQ
Users that are interested in MetaQ are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The code will come soon.☆16Sep 12, 2025Updated 9 months ago
- A Guide to the Analysis of Spatial Transcriptomics☆12Jul 29, 2024Updated last year
- Single-Cell Inference of Class Switch Recombination☆23Jun 19, 2026Updated last week
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- Single-cell Mutual Information-based Network Engineering Ranger☆24Aug 28, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆47Sep 3, 2025Updated 9 months ago
- PyTorch implementation for Incomplete Multi-view Clustering via Prototype-based Imputation (IJCAI 2023)☆20Dec 1, 2025Updated 6 months ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆16Jul 5, 2023Updated 2 years ago
- Drug Response Estimation from single-cell Expression Profiles☆13Jan 5, 2024Updated 2 years ago
- ☆37Jun 8, 2026Updated 3 weeks ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆19Jun 5, 2026Updated 3 weeks ago
- Scaling Single Cell Analysis to Millions of Cells☆290Jun 13, 2026Updated 2 weeks ago
- ☆15Feb 28, 2025Updated last year
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆17Jul 29, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Jan 8, 2026Updated 5 months ago
- [ACM MM 2025] Phys4DGen: Physics-Compliant 4D Generation with Multi-Material Composition Perception☆13Apr 18, 2026Updated 2 months ago
- ☆17Sep 16, 2024Updated last year
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆32Oct 6, 2025Updated 8 months ago
- monae: multi-modal single-cell integration and imputation☆13Sep 13, 2024Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆41Nov 10, 2025Updated 7 months ago
- Benchmarking pipeline for single-cell perturbation prediction tools☆34Jul 11, 2025Updated 11 months ago
- ☆14Jul 16, 2024Updated last year
- fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data☆48Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Official implementation of "Decoupled Contrastive Multi-View Clustering with High-Order Random Walks", [AAAI 2024].☆29Feb 6, 2024Updated 2 years ago
- R package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data☆29May 4, 2026Updated last month
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆51May 14, 2025Updated last year
- ☆32Jun 15, 2026Updated 2 weeks ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆105May 20, 2026Updated last month
- ☆15Aug 11, 2025Updated 10 months ago
- ☆26Feb 20, 2025Updated last year
- R package for differential discovery analyses in high-dimensional cytometry data☆25Feb 8, 2025Updated last year
- an R package for deep mining gene co-expression networks in multi-trait expression data☆22Jan 23, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆31Oct 24, 2024Updated last year
- ☆22Apr 7, 2025Updated last year
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆86Jun 17, 2026Updated last week
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 5 years ago
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆27Apr 3, 2026Updated 2 months ago