Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"
☆29Dec 7, 2024Updated last year
Alternatives and similar repositories for MetaQ
Users that are interested in MetaQ are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Guide to the Analysis of Spatial Transcriptomics☆12Jul 29, 2024Updated last year
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 3 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆107Jul 13, 2026Updated last week
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- The code will come soon.☆16Sep 12, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆17Jul 8, 2024Updated 2 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- ☆12Jan 8, 2026Updated 6 months ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆17Mar 17, 2026Updated 4 months ago
- About PyTorch implementation for ‘’Robust Multi-View Clustering with Noisy Correspondence‘’ (TKDE 2024)☆11Aug 2, 2024Updated last year
- SCIPAC (Single- Cell and bulk data-based Identifier for Phenotype Associated Cells) is a computational method that identifies cells in si…☆16Jun 30, 2024Updated 2 years ago
- Robust and scalable single-cell signature scoring☆28Jun 4, 2026Updated last month
- Diffusion-based Missing-view Generation With the Application on Incomplete Multi-view Clustering☆10May 26, 2024Updated 2 years ago
- The official repos of "Rethinking Multi-view Representation Learning via Distilled Disentangling"☆14Apr 3, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Single-Cell Inference of Class Switch Recombination☆24Jun 19, 2026Updated last month
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆192Mar 27, 2025Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆41Nov 10, 2025Updated 8 months ago
- A computational framework☆18Jun 1, 2026Updated last month
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆47Sep 3, 2025Updated 10 months ago
- ☆19May 25, 2026Updated last month
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆17Jul 29, 2025Updated 11 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- Code of Graph Contrastive Partial Multi-View Clustering☆12Mar 10, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- [AAAI 2024] PyTorch implementation for Deep Incomplete Multi-View Learning Network with Insufficient Label Information☆16Mar 17, 2025Updated last year
- Cell marker identification and evaluation pipeline in single cell transcriptomes.☆10Jan 9, 2025Updated last year
- Automatically annotate cell types, consistently across samples.☆25Jul 13, 2026Updated last week
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆38Jan 13, 2026Updated 6 months ago
- ☆24Jun 14, 2025Updated last year
- EnrichMap: Spatially-informed enrichment analysis for functional interpretation of spatial transcriptomics.☆15Jun 26, 2026Updated 3 weeks ago
- Scaling Single Cell Analysis to Millions of Cells☆295Jul 13, 2026Updated last week
- Drug Response Estimation from single-cell Expression Profiles☆13Jan 5, 2024Updated 2 years ago
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆23Dec 16, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package for single-cell comparative regulatory analysis☆12Jun 26, 2021Updated 5 years ago
- ☆59Aug 6, 2025Updated 11 months ago
- Official code and datas for "Bridging Gaps: Federated Multi-View Clustering in Heterogeneous Hybrid Views". (NeurIPS 2024)☆17Oct 13, 2024Updated last year
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆15Feb 23, 2026Updated 4 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Jun 10, 2025Updated last year
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆20May 28, 2026Updated last month
- scSurvival is a new tool for survival analysis from single cell cohort dataset.☆24Apr 27, 2026Updated 2 months ago