CSkylarL / TimiGPLinks
An R package to infer cell-cell interactions and clinical values in tumor immune microenvironment through gene pairs.
☆24Updated last year
Alternatives and similar repositories for TimiGP
Users that are interested in TimiGP are comparing it to the libraries listed below
Sorting:
- scGSVA: Perform GSVA for single cell RNA seq☆64Updated 9 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆83Updated 2 years ago
- Accurate and fast cell marker gene identification with COSG☆62Updated 2 years ago
- Code repository for single cell RNA-seq☆36Updated 4 years ago
- R package for pathway analysis in scRNA-seq data☆75Updated 11 months ago
- A R package for advanced single cell data viz☆68Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆87Updated last month
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 9 months ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆40Updated 2 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 3 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆58Updated 2 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆120Updated 11 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆74Updated 2 years ago
- ☆61Updated 6 years ago
- ☆50Updated 5 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆73Updated 5 years ago
- ☆58Updated last year
- ☆68Updated last year
- Methods for decontamination of single cell data☆47Updated 5 months ago
- An R framework for choosing clustering parameters in scRNA-seq analysis pipelines☆36Updated 5 years ago
- ☆63Updated 4 years ago
- Repository for codes for the HBCA paper☆36Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆43Updated last week
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆38Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- ☆30Updated 2 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year