CSkylarL / TimiGPLinks
An R package to infer cell-cell interactions and clinical values in tumor immune microenvironment through gene pairs.
☆24Updated last year
Alternatives and similar repositories for TimiGP
Users that are interested in TimiGP are comparing it to the libraries listed below
Sorting:
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆45Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆68Updated last year
- R package for Protein activity analysis of single-cell RNAseq.☆85Updated 3 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆34Updated 5 years ago
- ☆48Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆36Updated 2 months ago
- Code repository for single cell RNA-seq☆39Updated 5 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 8 months ago
- Methods for decontamination of single cell data☆54Updated 10 months ago
- Accurate and fast cell marker gene identification with COSG☆62Updated 3 years ago
- A R package for advanced single cell data viz☆68Updated 4 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Updated 4 years ago
- ☆32Updated 10 months ago
- Repository for codes for the HBCA paper☆40Updated 2 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆18Updated 2 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆30Updated 2 years ago
- ☆50Updated 5 years ago
- Visualize the results of cell-cell communication analysis☆24Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆40Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆91Updated 3 weeks ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆87Updated 3 years ago
- Accurate and fast cell marker gene identification with COSG☆54Updated 2 weeks ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- ☆22Updated 2 years ago
- R code used to analyze single cell PDAC data☆41Updated last year
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Updated 3 years ago