CSkylarL / TimiGPLinks
An R package to infer cell-cell interactions and clinical values in tumor immune microenvironment through gene pairs.
☆24Updated 11 months ago
Alternatives and similar repositories for TimiGP
Users that are interested in TimiGP are comparing it to the libraries listed below
Sorting:
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- Aligning gene expression trajectories of single-cell reference and query systems☆65Updated 7 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆36Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 7 months ago
- ☆13Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Hierarchical Cell Annotation☆20Updated 6 months ago
- Code repository for single cell RNA-seq☆35Updated 4 years ago
- ☆15Updated 3 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last month
- ☆18Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 6 months ago
- ☆55Updated last year
- ☆22Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- ☆49Updated 5 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated last week
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- ☆37Updated 2 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- ☆26Updated 3 years ago
- ☆12Updated 2 months ago