raphael-group / deciferLinks
DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell fractions (DCF).
☆22Updated last year
Alternatives and similar repositories for decifer
Users that are interested in decifer are comparing it to the libraries listed below
Sorting:
- An R package to time somatic mutations☆65Updated 5 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆45Updated last month
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Single-cell copy number calling and event history reconstruction.☆28Updated last year
- ☆83Updated 9 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆63Updated 2 months ago
- ☆17Updated 7 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Updated last year
- ☆38Updated 5 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 4 months ago
- An R package to plot maps of clone distributions in somatic evolution☆19Updated 2 years ago
- ☆13Updated 8 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆13Updated 3 months ago
- RNA editing tests☆17Updated 5 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- An R package for predicting HR deficiency from mutation contexts☆30Updated 11 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Updated 10 months ago
- Full-length transcriptome splicing and mutation analysis☆86Updated last year
- ☆48Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Micro DNA identification☆23Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated 2 weeks ago
- MutSig2CV from Lawrence et al. 2014☆33Updated 5 years ago
- ☆34Updated 6 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆77Updated this week