raphael-group / decifer
DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell fractions (DCF).
☆20Updated 11 months ago
Alternatives and similar repositories for decifer:
Users that are interested in decifer are comparing it to the libraries listed below
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- An R package to time somatic mutations☆61Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Single-cell copy number calling and event history reconstruction.☆23Updated 4 months ago
- An analysis toolkit for single-cell methylation sequencing data☆18Updated last month
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- ☆38Updated 5 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 2 months ago
- ☆16Updated 6 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 2 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- ☆32Updated 5 years ago
- ☆34Updated 5 years ago
- ☆15Updated 3 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated last month
- ☆13Updated 7 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14Updated 5 years ago
- ☆33Updated last year
- Scripts used for the ACT paper☆12Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- Next-Gen Sequencing tools from the Horvath Lab☆43Updated this week
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated last month
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆26Updated 3 weeks ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 5 months ago
- Toolkit for single-cell copy number analysis☆23Updated 6 months ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago