Alternatives and similar repositories for metaICB:

Users that are interested in metaICB are comparing it to the libraries listed below

• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆16Updated 2 years ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago
• zgyaru / anti-PD1_ESCC
  ☆16Updated last year
• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆30Updated 2 years ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• liziyie / Onco-fetal-CAF-in-HCC
  ☆19Updated last year
• guangchunhan / LUAD_Code
  ☆16Updated last year
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆20Updated 4 months ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆21Updated last year
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆20Updated 2 years ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated 11 months ago
• jumphone / FitDevo
  FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight
  ☆16Updated 11 months ago
• bio-Pixel / panVC
  ☆44Updated last year
• CICAMS-Liu-lab / ECGEA
  ☆17Updated 4 years ago
• Famingzhao / NEPAL_RawCode
  NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…
  ☆11Updated 11 months ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆16Updated last year
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 4 months ago
• SeadonXing / SSN_scRNA-seq
  The codes and files for the study of subsolid nodules (SSN).
  ☆14Updated 4 years ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆28Updated last month
• ventolab / HECA-Human-Endometrial-Cell-Atlas
  Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.
  ☆24Updated 9 months ago
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆34Updated 9 months ago
• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated 3 weeks ago
• DongqiangZeng0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆28Updated 2 years ago
• ZxZhou4150 / Redeconve
  Deconvolution of spatial transcriptomics at single-cell resolution
  ☆17Updated 6 months ago
• miccec / yaGST
  ☆13Updated 7 years ago
• Chuxj / CRC-atlas
  ☆25Updated 9 months ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆25Updated last year
• wu-yc / neutrophil
  ☆15Updated 2 years ago