Modular Genome Assembly, Annotation and Assessment Pipeline
☆23Mar 16, 2026Updated 5 months ago
Alternatives and similar repositories for MoGAAAP
Users that are interested in MoGAAAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated 4 months ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆32Apr 2, 2026Updated 5 months ago
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆22Updated this week
- Generation and updating of protein families☆23Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Repository for scripts used in barley pan-genome graph construction with Minigraph☆15Oct 15, 2025Updated 10 months ago
- ☆94Jul 31, 2026Updated last month
- Phyling: phylogenetic inference from annotated genomes☆33Jul 27, 2026Updated last month
- Here, we report telomere-to-telomere (T2T) gap-free genomes for domesticated pepper Capsicum annuum and wild relative Capsicum rhomboideu…☆13Feb 18, 2024Updated 2 years ago
- This is a modified version of EDTA -- zgtools☆20Aug 26, 2026Updated last week
- ESM-driven Pocket Cross Similarity☆18Aug 11, 2025Updated last year
- Structure variants calling and genotyping scripts for pan-Zea☆23Nov 17, 2022Updated 3 years ago
- Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2☆14Jul 22, 2026Updated last month
- ☆28May 12, 2026Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆15Nov 25, 2019Updated 6 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 4 years ago
- ☆18Apr 26, 2026Updated 4 months ago
- scripts used in Rice Pangenome Projects (Evolution).☆16Oct 29, 2023Updated 2 years ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12May 22, 2025Updated last year
- I often use some of the self-written programs.☆16Jun 12, 2026Updated 2 months ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Jun 18, 2026Updated 2 months ago
- Using Deep Learning to predict gene annotations☆304Jul 22, 2026Updated last month
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 8 years ago
- ☆29Jul 16, 2022Updated 4 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Detailed bioinformatics scripts and methods used in the Maize-Pan-genome paper.☆17Oct 8, 2025Updated 10 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆207Aug 27, 2026Updated last week
- Plant genome assembly and annotation pipeline using snakemake☆55May 14, 2025Updated last year
- Quartet-based species tree and tree of blob estimation☆16Jul 3, 2026Updated 2 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆64May 17, 2026Updated 3 months ago
- This is the standalone version of the EviAnn pipeline☆183Aug 11, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- FastK based version of Merqury☆33Jan 19, 2026Updated 7 months ago
- k-mer based assembly evaluation☆353Jul 6, 2026Updated last month
- Fast alignment tool based on bwa-mem☆29Feb 22, 2026Updated 6 months ago
- BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.☆12Sep 7, 2022Updated 3 years ago
- Emending Alignment of Spliced Transcript Reads☆12Jan 19, 2026Updated 7 months ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 6 months ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆38Apr 7, 2026Updated 4 months ago