A manually curated pan-plant database of ligand-receptor pairs infers cell-cell communication
☆10Jan 2, 2023Updated 3 years ago
Alternatives and similar repositories for PlantPhoneDB
Users that are interested in PlantPhoneDB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A model-based downsampling algorithm for single-cell☆10Jan 21, 2023Updated 3 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 4 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- NLR annotation tool☆40Mar 6, 2024Updated 2 years ago
- ☆23Oct 30, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- An integrated toolkit for viral phylogeographic analysis☆13Jun 22, 2026Updated 4 months ago
- Alignment-Free Taxonomic Classification Deep Learning Model☆17Apr 8, 2026Updated 6 months ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 8 years ago
- a software for annotating plant genes☆24Dec 22, 2023Updated 2 years ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 4 years ago
- A library for counting small kmer frequencies in nucleotide sequences.☆29Jul 7, 2026Updated 3 months ago
- CancerMIRNome - an interactive analysis and visualization database for miRNome profiles of human cancer☆12Aug 9, 2024Updated 2 years ago
- Cross-cell type gene expression prediction with deep learning reveals systematic cis-regulatory patterns at hierarchical levels☆10Oct 30, 2023Updated 3 years ago
- Single-cell Analysis of Host-Microbiome Interactions☆11Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BLAST-like algorithm for R based on the nsearch library (https://github.com/stevschmid/nsearch)☆15Apr 24, 2026Updated 6 months ago
- ☆11Jun 21, 2025Updated last year
- Metagenomic classifier for CUDA-enabled GPUs☆17Jun 12, 2018Updated 8 years ago
- Kdrew's scripts for handling protein complex map data☆14Jun 17, 2026Updated 4 months ago
- ☆10Oct 16, 2026Updated 3 weeks ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆28Jul 13, 2026Updated 3 months ago
- Knn implementation without K parameter☆10Jun 12, 2018Updated 8 years ago
- ☆10Jan 27, 2025Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆10Oct 6, 2017Updated 9 years ago
- ☆10Jan 18, 2023Updated 3 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- FEELnc : FlExible Extraction of LncRNA☆96Jul 23, 2025Updated last year
- 面向科研论文的 R/ggplot2 出版级统计图作图技能，包含中文简介和示例图。☆17Aug 20, 2026Updated 2 months ago
- ☆16Jul 7, 2025Updated last year
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- In-memory OLAP SQL server for object storage data.☆15Oct 15, 2025Updated last year
- COmplex Network Description Of Regulators, an R package for bipartite network analysis☆12Jul 5, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆10Sep 19, 2020Updated 6 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- A dotplot application for DNA/RNA sequence☆12Nov 28, 2022Updated 3 years ago
- ☆19Jan 12, 2026Updated 9 months ago
- ☆11Jul 8, 2019Updated 7 years ago
- Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.☆19Feb 2, 2026Updated 9 months ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 8 years ago